Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1534
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   2.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.8  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 49   TLMQHCIAVFVNNXLQFAFYSF*XVIRVYITWL 147
            TL   CI+ F+ N  QFA+  F    R ++ WL
Sbjct: 1356 TLTALCISPFLYNPHQFAWTDFFVDYREFMRWL 1388


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 34   FYKLDTLMQHCIAVFVNNXLQFAFYSF*XVIRVYITWL 147
            ++ + TL   CI+ F+ N  QF++  F    R +I WL
Sbjct: 1510 YFWISTLAM-CISPFIFNPHQFSWTDFFVDYREFIRWL 1546


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 49   TLMQHCIAVFVNNXLQFAFYSF*XVIRVYITWL 147
            ++M  C+A F+ N  QF +  F    R +I WL
Sbjct: 1540 SIMALCVAPFLFNPHQFDWNDFFVDYREFIRWL 1572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,084
Number of Sequences: 5004
Number of extensions: 24091
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)