Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1530
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    54   2e-08
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    54   2e-08
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    54   2e-08
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    45   7e-06
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.3  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = -3

Query: 596 RFQSAAIGALQEQARAYLVGLFEDTNLCAI 507
           RFQS+AIGALQE   AYLV LFEDTNLCAI
Sbjct: 84  RFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -2

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = -3

Query: 596 RFQSAAIGALQEQARAYLVGLFEDTNLCAI 507
           RFQS+AIGALQE   AYLV LFEDTNLCAI
Sbjct: 84  RFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -2

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = -3

Query: 596 RFQSAAIGALQEQARAYLVGLFEDTNLCAI 507
           RFQS+AIGALQE   AYLV LFEDTNLCAI
Sbjct: 84  RFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -2

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -3

Query: 596 RFQSAAIGALQEQARAYLVGLFEDTNLCAI 507
           R+QS A+  LQE A A+LV LFEDTNLCAI
Sbjct: 70  RWQSTALQCLQEAAEAFLVHLFEDTNLCAI 99



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = -2

Query: 561 ASEGLSRWLVRRHQLVCYHAKRVTIMPKDIQLARRIRG 448
           A+E     L     L   HAKRVTIM +D+QLARRIRG
Sbjct: 82  AAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 430 TNLSTFTTDSSSKLNILRHDGHTFGVIAHKLVSSNK 537
           T+ ST T+ SSS         H+  + +HK  SS+K
Sbjct: 378 TSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSK 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,098
Number of Sequences: 5004
Number of extensions: 40629
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)