Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1523
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    29   0.30 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   0.70 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   2.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   2.8  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.7  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   4.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   4.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   4.9  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   4.9  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   6.5  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   6.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   6.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   8.6  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 228 AGCRRQVIAAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 359
           A  R++ +A+ K V  +          ++ TQH +  LKDV HS
Sbjct: 127 ANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 249 IAAHKLVLSVCSPYFQEMF-KMNPTQHPI 332
           + AHK  L+  S YF+  F K+ P++H I
Sbjct: 178 VFAHKFYLAARSSYFKSKFSKLGPSEHEI 206


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 321 VLDSF*TFLENRENILIELIYVLQ*PAFGSQRYVQEISARQQAMIAWYDSCV 166
           ++D F    E  E  L  L+Y L    +GS  Y  E   R QA ++ +  C+
Sbjct: 454 IMDQFPNCFEFNERFLRRLLYHLYSCQYGSFLYNSE-RERAQASVSTHTRCI 504


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 69   TGIISTKLRIGSTSSRRYHGVGRTILTMLEQFTR 170
            T +I T LRI ST         + ILT++ Q  R
Sbjct: 1046 TMVIKTLLRIASTEGNNLKDSWKDILTIISQLER 1079


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 110 ESTLSWRRTNNFDYAGTIYTQESYQAIMACCRA 208
           +STL+WR   N++    +Y +E  +    C +A
Sbjct: 65  DSTLAWRDYENYNDDDLLYQRELSEIYNKCLKA 97


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 165 TRKNRTRLSWPAAARRSLGRNAGCRRQVI 251
           TR + T  S+ ++ R++LGR    + QVI
Sbjct: 813 TRASTTNASFMSSVRQNLGRGPSTKDQVI 841


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 121 IMASDEQF*LCWNNLHARIVPGYHGLLPRGDLLDVTL 231
           +  ++EQ    ++ L    +PGY+  +  G LLD+T+
Sbjct: 313 VYCTEEQAYFLFSQLCEFYIPGYYAKIIHGLLLDLTV 349


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 92  KLCTYNSGRRNX*NKYNSMFPPEPFTHF 9
           ++CT N  + +  N+YN +  P+P   F
Sbjct: 247 RVCTQNEYKSDPKNQYNILGAPKPHVFF 274


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 47  IYFKXFSYRNYKYKA*DRIHVESTLSWRRTNNFDYAGTIYTQESYQAIMACCRAEIS 217
           +YF  + +  Y       + +E TLS     N   A T    +S+   +AC   + S
Sbjct: 525 VYFPNYPWTMYANVTTYTVQLEDTLSSGMIENAAVAATQNNSDSFAVCVACALVQRS 581


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 64  ETFEINITQCSHXSPLHIS 8
           ++F  NI QC+  SPL +S
Sbjct: 347 QSFSTNIVQCASPSPLPLS 365


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 103 PRRVDAIMASDEQF*LCWNNLHARIVPGYHGLLPRGDLLDVTLAAEGRL 249
           PR ++ ++ +D  F    ++  A ++PG  GLLP   L  V   +E ++
Sbjct: 234 PRTLNGVVLTDNLFGDIISD-EASVIPGSLGLLPSASLSGVVGKSEEKV 281


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 285 ENILIELIYVLQ*PAFGSQRYVQEISARQQAMIAWYDSC 169
           +NI+ EL  + +   F    + +EIS+++Q    W + C
Sbjct: 267 QNIVAELSEMRKQYEFSQVSFEKEISSQKQISELWMEKC 305


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 106  VDPILSFVLIIPVGETFEIN 47
            VD  L +VL  P+GETFE+N
Sbjct: 1356 VDMQLLYVLG-PIGETFEVN 1374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,119
Number of Sequences: 5004
Number of extensions: 26334
Number of successful extensions: 64
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)