Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1523
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0027 - 195321-195932,197206-197415 30 0.49
02_03_0144 + 15694766-15694883,15694980-15697612 29 0.86
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140... 29 1.1
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 28 2.0
10_08_0059 + 14529885-14530991 28 2.6
07_01_1036 + 9021395-9021658,9024214-9024690 27 3.5
09_04_0585 - 18720407-18720693,18721411-18721513,18721642-187222... 27 6.1
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 27 6.1
03_02_0273 - 7036125-7037999 27 6.1
06_01_1008 - 7853089-7854147 26 8.1
04_04_0489 + 25600543-25601368,25601441-25602282 26 8.1
01_05_0604 - 23583244-23584989 26 8.1
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 246 VIAAHKLVLSVCSPYFQEMF 305
V+ AHK +L+ CSP F+ MF
Sbjct: 118 VLKAHKAILASCSPVFESMF 137
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 155 QHSQNCSSDAMIASTRRGSYPKLCTYNSGRRNX*NKYNSMFPPEPFTH 12
QHSQN +D++ +S+ GSY Y +G++ N PP TH
Sbjct: 645 QHSQNVDADSIQSSSTLGSY-----YWNGKQPSYPPRNQFSPPHSCTH 687
>03_06_0054 +
31313348-31313560,31313662-31313856,31313933-31314098,
31314193-31314599
Length = 326
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 117 RYHGVGRTILTMLEQFTRKNRTRLSWPAAARRSLGRNAGCRRQVIAAHKLVLSVCSPYFQ 296
R G+ + + + + N T LS A +S G N + AAH + L+ CS +
Sbjct: 148 RLDGMRSSASNVAGKLPQPNNT-LSELVAIFKSNGLNMSDMVALSAAHSVGLAHCSKFSD 206
Query: 297 EMFKMNPTQHP 329
+++ NP P
Sbjct: 207 RLYRYNPPSQP 217
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 231 GCRRQVIAAHKLVLSVCSPYFQEMFK 308
GC+ V+AAHKLV S S + EMF+
Sbjct: 662 GCQEAVLAAHKLVFS--SGWSDEMFE 685
>10_08_0059 + 14529885-14530991
Length = 368
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 222 RNAGCRRQVIAAHKLVLSVCSPYFQ 296
R AG + +AAH++VL+ SP F+
Sbjct: 203 RGAGGEEETVAAHRVVLAARSPVFK 227
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 249 IAAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALK 368
+ AH+++L+ SP F+ M +M ++ I+ + DVS+ L+
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLR 122
>09_04_0585 -
18720407-18720693,18721411-18721513,18721642-18722263,
18722602-18722689,18722815-18722892,18723116-18723191,
18723697-18723755,18723907-18723964,18724070-18724216
Length = 505
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 237 RRQVIAAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSH 356
R +AAH ++L+ + K PTQH + + VSH
Sbjct: 229 REPYLAAHHVILAHATAVHLYRTKYQPTQHGQIGITAVSH 268
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 246 VIAAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDV 350
V AHKL+LS+ S F +MF M + VF +DV
Sbjct: 362 VTHAHKLILSLWSMTFDKMFTNGMKESSASNVFFEDV 398
>03_02_0273 - 7036125-7037999
Length = 624
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 65 SYRNYKYKA*DRIHVESTLSWRRT-NNFDYAGTI 163
+YR Y+ KA HV LSW ++ N FD +I
Sbjct: 269 AYRRYRKKAPVPKHVSPKLSWTKSLNRFDSNSSI 302
>06_01_1008 - 7853089-7854147
Length = 352
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 AHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALK 368
AHK++L+ SP F F M + V +KD+ S K
Sbjct: 190 AHKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFK 229
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 26.2 bits (55), Expect = 8.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 50 YFKXFSYRNYKYKA*DRIHVESTLSW 127
+FK + Y NY+Y +R ++ ++W
Sbjct: 487 FFKKWMYANYRYLMGERPRLDEAMAW 512
>01_05_0604 - 23583244-23584989
Length = 581
Score = 26.2 bits (55), Expect = 8.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 50 YFKXFSYRNYKYKA*DRIHVESTLSW 127
+FK + Y NY+Y +R ++ ++W
Sbjct: 513 FFKKWMYANYRYLMGERPRLDEAMAW 538
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,499,998
Number of Sequences: 37544
Number of extensions: 170352
Number of successful extensions: 411
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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