Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1519
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   0.70 
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    27   1.2  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   2.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    24   8.6  

>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 234 CRGSRPWSSIKSD--KDKFQVNLDVQHFAPEEISVK 335
           CRGS PW  +++D  + K+Q   D +   P E+  K
Sbjct: 208 CRGSLPWQGLQADTKEQKYQRIRDTKIGTPLEVLCK 243


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 234 CRGSRPWSSIK--SDKDKFQVNLDVQHFAPEEI 326
           CRGS PW  +K  + K K++  ++ +   P E+
Sbjct: 209 CRGSLPWQGLKATTKKQKYEKIMEKKISTPTEV 241


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 265 KVIRISSKLTWTSSISPRKKSL 330
           KV+R S+K+  TSS+   KKSL
Sbjct: 168 KVLRSSTKVVLTSSLVAEKKSL 189


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 186 RPPCEQRILPPVASPCCRGSRPWSSI 263
           RPP   RIL P  S      RP SSI
Sbjct: 407 RPPSNLRILAPSRSRATIHERPSSSI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,183
Number of Sequences: 5004
Number of extensions: 22924
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)