Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1519
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312...    32   0.12 
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817           28   2.6  
05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155           27   4.6  
01_05_0676 + 24195350-24195884,24195975-24196522                       27   4.6  
12_02_0136 + 14109557-14109661,14109742-14109804                       27   6.1  
05_06_0278 + 26894802-26895362                                         27   6.1  
04_03_0868 - 20420298-20420915                                         27   6.1  
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609...    26   8.1  

>05_01_0396 -
           3121189-3121226,3121552-3121609,3121938-3122060,
           3122170-3122323,3122590-3122678,3123185-3123410,
           3123575-3123760,3123859-3123914,3124381-3124464,
           3124547-3124627,3124773-3125045,3125143-3125263,
           3126094-3126230,3126406-3126697,3127401-3127585
          Length = 700

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 24/64 (37%), Positives = 35/64 (54%)
 Frame = +1

Query: 148 LGLTPEDFLSAAXGPLVSREYYRPWRHLAAAARDLGPASKVIRISSKLTWTSSISPRKKS 327
           LG T +  L AA  P  +R   RP    AAA  D+GPAS   R++  LT+   + P ++S
Sbjct: 10  LGFTGDFVLDAASSPSATRRR-RPVPPEAAAGGDVGPAS--FRLAPDLTF---LQPSERS 63

Query: 328 LLKR 339
            ++R
Sbjct: 64  AIER 67


>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
          Length = 250

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 193 LVSREYYRPWRHLAAAARDLGPA 261
           +V  ++  PW+H+AAA    GPA
Sbjct: 129 VVDEDHLLPWQHIAAAVTSGGPA 151


>05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155
          Length = 86

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 189 PPCEQRILPPVASPCCRGSR 248
           PPC  R+L PVAS   RG R
Sbjct: 6   PPCLLRVLLPVASSSSRGLR 25


>01_05_0676 + 24195350-24195884,24195975-24196522
          Length = 360

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 163 EDFLSAAXGPLVSREYYRPWRHLAA--AARDLGPASKVIRISSKLTWTSSI 309
           +D L A    L   + Y+P+ HL A  A R+L  A  ++ +   +   SSI
Sbjct: 287 QDKLGATWQNLKKHKQYKPYLHLGAPRAPRELAQAQHLLLLMGMIQMLSSI 337


>12_02_0136 + 14109557-14109661,14109742-14109804
          Length = 55

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 189 PPCEQRILPPVA 224
           PPC +R+LPP+A
Sbjct: 8   PPCRRRLLPPIA 19


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 117 SSSPHGSTFRLGADSGRFSQCCXRPPCEQRILPPVASPCCRGS 245
           S  P GST  L  D G+       PP  Q   PP+ SP  R S
Sbjct: 111 SPQPGGSTKPLSDDDGK-PPLGIAPPSPQGNKPPITSPRLRTS 152


>04_03_0868 - 20420298-20420915
          Length = 205

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 204 RILPPVASPCCRGSRPWSSIKSDKDKFQVNLDVQHFAPEEI 326
           R  PP  S   +G RPW S+++ ++  ++ L       +E+
Sbjct: 122 RAFPPPISVIGKGGRPWLSLRAHREAGRLVLREMRLPSQEL 162


>07_03_0275 -
           16160467-16160555,16160695-16160764,16160860-16160940,
           16161160-16161252,16161430-16161510,16161605-16161694,
           16161812-16161905,16162063-16162131,16162205-16162275,
           16162545-16162628,16162755-16162847,16162995-16163102,
           16163297-16163447,16164026-16164297,16165213-16165218,
           16165389-16165613
          Length = 558

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 133 DQHFGLGLTPEDFLSAAXGPLVSREYYRPWRHLAAAARDLGPA 261
           D    LG+T  D +S A   + +R +  P R  A A +DLG A
Sbjct: 29  DTEEDLGVTDADEVSRAPRAMPTRIWVSPTRLPAVADKDLGVA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,076,552
Number of Sequences: 37544
Number of extensions: 180360
Number of successful extensions: 498
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)