Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1514
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 33 0.17
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.39
03_01_0491 + 3720842-3720958,3721904-3723109 30 0.90
07_01_1127 + 10456895-10457388,10457488-10458112 29 2.1
05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312... 29 2.1
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 29 2.7
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 2.7
09_03_0036 + 11772940-11773171,11774995-11775104 29 2.7
04_01_0252 - 3329712-3331061 29 2.7
01_01_0231 + 1951047-1951499 29 2.7
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 2.7
01_01_0229 - 1943473-1943922 29 2.7
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817 28 4.8
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 4.8
01_01_0227 + 1933247-1933699 27 6.3
11_06_0266 - 21791757-21792982,21793154-21793178 27 8.4
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902... 27 8.4
05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155 27 8.4
04_03_0801 - 19828175-19828770,19828913-19828994 27 8.4
01_07_0105 - 41104655-41104851,41105818-41107150 27 8.4
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +3
Query: 249 PWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ 389
PW ++ DK+ ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 134 PWDVMEDDKE-VRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGE 179
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 372 RVCLQPRCSRPPF*QRFLPGRNAGR 298
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 258 WTKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 103
W+ + +G KV A G GC K+F S+ +A+ H A +L F+
Sbjct: 379 WSLIGIKGDKV-------GADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 372 RVCLQPRCSRPPF*QRFLPGRNAGR 298
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>05_01_0396 -
3121189-3121226,3121552-3121609,3121938-3122060,
3122170-3122323,3122590-3122678,3123185-3123410,
3123575-3123760,3123859-3123914,3124381-3124464,
3124547-3124627,3124773-3125045,3125143-3125263,
3126094-3126230,3126406-3126697,3127401-3127585
Length = 700
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 148 LGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLGPAS 264
LG T + L AA+ P +R RP AAA D+GPAS
Sbjct: 10 LGFTGDFVLDAASSPSATRRR-RPVPPEAAAGGDVGPAS 47
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 443
+SDKDK N+D + A E + ++ E K +EK + H Y + R L E
Sbjct: 488 ESDKDKIMCNVDEKDIA-EHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLKEQI 546
Query: 444 RLNLW 458
N++
Sbjct: 547 GKNIY 551
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 319 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 414
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 317 GRNLC*NGGRLHRG*RQTRGEERSAWLH 400
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 372 RVCLQPRCSRPPF*QRFLPGRNAGR 298
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>01_01_0231 + 1951047-1951499
Length = 150
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +3
Query: 297 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCRLN 452
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +3
Query: 297 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCRLN 452
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
>01_01_0229 - 1943473-1943922
Length = 149
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +3
Query: 297 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCRLN 452
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
Length = 250
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 193 LVSREYYRPWRHLAAAARDLGPA 261
+V ++ PW+H+AAA GPA
Sbjct: 129 VVDEDHLLPWQHIAAAVTSGGPA 151
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 437
+SDKDK N+D + A E + V+ E K +EK + H Y + R L E
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKE 558
>01_01_0227 + 1933247-1933699
Length = 150
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 357 VEGKHEEKKDQHGYISRQFTRRYALPEGCRLN 452
V+GK++E+ S +F RR+ LP G R++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVD 118
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 27.1 bits (57), Expect = 8.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 438 GCRLNLWSPGCLRWCV 485
G +L LW PG WC+
Sbjct: 204 GAKLALWRPGMTSWCI 219
>10_05_0086 +
9025410-9025730,9025974-9026008,9026194-9026279,
9026602-9026740,9028504-9028663
Length = 246
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 129 HGSTFRLGADS-GRFSQCCSRPPCEQRILPPVASPCCRGSRPWSSIKSDKDKFQVNLDV 302
HGST G +S GR + S PP LPP AS C S SS S + ++ +DV
Sbjct: 36 HGSTGGGGEESSGRQATLQSSPP-----LPPPASSCALPSSWLSSTSSLLGRCRLPMDV 89
>05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155
Length = 86
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 189 PPCEQRILPPVASPCCRGSR 248
PPC R+L PVAS RG R
Sbjct: 6 PPCLLRVLLPVASSSSRGLR 25
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +3
Query: 150 GADSGRFSQCCSRPPCE-QRILPPVASPCCRG 242
G G CCS PPC Q + PP PC G
Sbjct: 182 GGGGGCKKPCCSPPPCPWQPVCPP--PPCGGG 211
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 270 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISR 407
D K N++ + EEI V+ + I+V + EE++++ ISR
Sbjct: 360 DAKKETSNIEAINVEQEEIKVEEEEEKIIVSQETEEEEEKSAVISR 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,692
Number of Sequences: 37544
Number of extensions: 321690
Number of successful extensions: 874
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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