Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1509
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.17
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 0.68
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.6
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 2.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 25 4.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 4.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.3
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 6.3
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 8.4
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.17
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 140 SSPLASXTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
S+ + S + S +TS DS++S T+ TSQG +SS S+
Sbjct: 841 SNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSL 885
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.68
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 107 ISVMTSRLVMMD-SISSDTSFTSQGMNSSSTPLS 9
+ ++T+R M ++S+DTS + M +S+TP+S
Sbjct: 45 LQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMS 78
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 140 SSPLASXTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S T+ T S +S S SS +S +S +SSS+ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 64 EIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRNEPED 198
EI + +RD EIV ++ E R RN+ E E EQ +NE +
Sbjct: 508 EINELQDNRDAALEIVTNIFEQR----RNINEL-EREQSQNEDHE 547
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 140 SSPLASXTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S S T S S ++SS +S +S + SSS+ S
Sbjct: 348 SSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS 391
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 140 SSPLASXTS--RTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S +S + S+ TS + S SS TS + +SSST S
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 1 ERIERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGE 138
ER++ V+E + L K ++L + SI+T D++ D+ A +
Sbjct: 158 ERLDPEVNESTIGRLKKELNLPVSSILTLDDIVDFTKSDLTAAESK 203
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +1
Query: 25 EEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEAR 132
E +PW+ K +E +++ +D+I+ + + + R
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNR 55
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 155 ATFLYSSPLASXTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSST 18
+T+L SS + ++ T + + V S SS TS+TS +SSST
Sbjct: 965 STYL-SSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSST 1009
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 130 RGELYRNVAEREENEQGRNEP-EDSXTHPXXVS 225
+ ++R + +ENE+ NEP E S + P VS
Sbjct: 291 KSAVFREDKQNDENEKNENEPIEASESAPTNVS 323
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 113 VTWXKPEENCTETLLRERRMNRGGTSPRTAXLT 211
+ W KPE+N T + +++ NR R T
Sbjct: 253 INWIKPEKNLTVRVETKKQRNRKTNQTRLVRTT 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,915
Number of Sequences: 5004
Number of extensions: 23178
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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