Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1509
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085... 32 0.29
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602... 30 1.2
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 29 1.6
10_08_0233 - 16061182-16061714,16062765-16063578 28 3.6
10_01_0129 + 1535823-1537196 28 3.6
04_04_1588 - 34633057-34633824 28 3.6
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 28 3.6
01_05_0490 + 22672241-22674679 28 3.6
11_06_0003 - 19155407-19155953,19156114-19156148 27 6.3
10_08_0501 - 18365871-18366170,18366190-18366372,18366458-18366634 27 6.3
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 27 8.4
>11_05_0034 +
18507023-18507243,18507347-18507473,18508463-18508531,
18508620-18508763
Length = 186
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/33 (54%), Positives = 18/33 (54%)
Frame = -1
Query: 256 HLRDALPPPPQTRRRGEXCCPRARSSPVHSPLS 158
HLR ALP PP R G P A SSP H LS
Sbjct: 15 HLRRALPSPP---RAGALLLPAAASSPAHRFLS 44
>07_01_0779 +
6020009-6020174,6022307-6022428,6022853-6022962,
6024342-6024395,6026977-6027096,6027790-6029347
Length = 709
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 268 ATSCHLRDALPPPPQTRRRGEXCCPRARSSPV 173
ATSC RD PPPP + ++ R RS P+
Sbjct: 604 ATSCLPRDDPPPPPTSAKKAGFLRRRRRSPPL 635
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 262 SCHLRDALPPPPQTRRRGEXCCPRARSSPVHSPL 161
S HLR A PPPP R R P SP H L
Sbjct: 8 SLHLRLAPPPPPHRRGRPPRHAPFLPLSPYHHHL 41
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 238 PPPPQTRRRGEXCCPRARSSPVHSPLSQQRFCTVLLWLPPRHVRFP 101
PPPP +RRR P +P+ S S LPP H R P
Sbjct: 106 PPPPSSRRRHHLGVPTVNGAPLCSSSSSA--------LPPPHSRTP 143
>10_01_0129 + 1535823-1537196
Length = 457
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 247 DALPPPPQTRRRGEXCCP 194
D PPPP+ RRRGE P
Sbjct: 64 DGQPPPPRRRRRGEPPSP 81
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 238 PPPPQTRRRGEXCC 197
PPPP+ R RG CC
Sbjct: 54 PPPPRRRSRGRRCC 67
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 279 LFVSRRLVIFEMLFLPLLRHXXGVSXAVLGLVPPL 175
L V R V FE +PLL G LGL+PPL
Sbjct: 527 LVVGRSCVEFEPETVPLLSTLRGKPITFLGLMPPL 561
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 238 PPPPQTRRRGEXCCPRARSSPVHSPLSQQR 149
PPPP TRR + P +R +P P QQ+
Sbjct: 644 PPPPTTRRSRKPPQPPSRPAPPPPPPPQQQ 673
>11_06_0003 - 19155407-19155953,19156114-19156148
Length = 193
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 ITSRDVITEI-VRDVXEARGELYRNVAEREENEQGRNEPED 198
I S+ V ++ VRD +R E + VAE EE E+ E E+
Sbjct: 26 IPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEEEE 66
>10_08_0501 - 18365871-18366170,18366190-18366372,18366458-18366634
Length = 219
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 235 PPPQTRRRGEXCCPRARSSPVHSP 164
PPP+ R RG CP A + P P
Sbjct: 107 PPPEERPRGWMPCPAAMAMPTPRP 130
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 244 ALPPPPQTRRRGEXCCPRARSSPV 173
A PPPP RRR CP A + P+
Sbjct: 35 ATPPPPPPRRRANR-CPDAATPPL 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,187,279
Number of Sequences: 37544
Number of extensions: 155996
Number of successful extensions: 622
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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