Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1509
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050604-1|AAH50604.1|  560|Homo sapiens radial spoke head 3 hom...    41   0.002
AL035530-5|CAI19236.1|  322|Homo sapiens radial spokehead-like 2...    41   0.002
AL035530-4|CAI19235.1|  418|Homo sapiens radial spokehead-like 2...    41   0.002
AK057931-1|BAB71615.1|  560|Homo sapiens protein ( Homo sapiens ...    41   0.002
AK057655-1|BAB71544.1|  322|Homo sapiens protein ( Homo sapiens ...    41   0.002
AF353618-1|AAK26432.1|  418|Homo sapiens radial spoke protein 3 ...    41   0.002
L49054-1|AAA99997.1|  268|Homo sapiens NPM-MLF1 protein.               32   1.3  
BC007045-1|AAH07045.1|  268|Homo sapiens myeloid leukemia factor...    32   1.3  

>BC050604-1|AAH50604.1|  560|Homo sapiens radial spoke head 3
           homolog (Chlamydomonas) protein.
          Length = 560

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 426 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 485

Query: 187 EP 192
           EP
Sbjct: 486 EP 487


>AL035530-5|CAI19236.1|  322|Homo sapiens radial spokehead-like 2
           protein.
          Length = 322

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 188 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 247

Query: 187 EP 192
           EP
Sbjct: 248 EP 249


>AL035530-4|CAI19235.1|  418|Homo sapiens radial spokehead-like 2
           protein.
          Length = 418

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 284 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 343

Query: 187 EP 192
           EP
Sbjct: 344 EP 345


>AK057931-1|BAB71615.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25202 fis, clone REC05350. ).
          Length = 560

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 426 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 485

Query: 187 EP 192
           EP
Sbjct: 486 EP 487


>AK057655-1|BAB71544.1|  322|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33093 fis, clone TRACH2000675, weakly similar to
           RADIAL SPOKE PROTEIN 3. ).
          Length = 322

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 188 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 247

Query: 187 EP 192
           EP
Sbjct: 248 EP 249


>AF353618-1|AAK26432.1|  418|Homo sapiens radial spoke protein 3
           protein.
          Length = 418

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 7   IERGVDEEFMPWLVKXVSLEIESIITSRDVITEIVRDVXEARGELYRNVAEREENEQGRN 186
           IER ++  F+PWL+  V   +E  +  R V+  ++R+V E R  +Y +  +  ++ +  +
Sbjct: 284 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMYEHGEDTHQSPEPED 343

Query: 187 EP 192
           EP
Sbjct: 344 EP 345


>L49054-1|AAA99997.1|  268|Homo sapiens NPM-MLF1 protein.
          Length = 268

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 70  ESIITSRDVITEIVRDVXEARGELYRNVAE---REENEQGRNEPEDSXTH 210
           ESI+  R+ + +++R   E  G    ++++   R  N +G N+ EDS TH
Sbjct: 17  ESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTH 66


>BC007045-1|AAH07045.1|  268|Homo sapiens myeloid leukemia factor 1
           protein.
          Length = 268

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 70  ESIITSRDVITEIVRDVXEARGELYRNVAE---REENEQGRNEPEDSXTH 210
           ESI+  R+ + +++R   E  G    ++++   R  N +G N+ EDS TH
Sbjct: 17  ESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTH 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,494,719
Number of Sequences: 237096
Number of extensions: 876156
Number of successful extensions: 5831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5829
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)