Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1508
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.34
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 29 0.60
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 0.79
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 2.4
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 4.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 5.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.6
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 5.6
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 7.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.3
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 9.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.7
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 140 SSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
S+ + S S +TS DS++S T+ TSQG +SS S+
Sbjct: 841 SNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSL 885
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 1 ERIERGVDEEFMPWLVKEVSLEIESIITSRDVITEIXRDVVEARGE 138
ER++ V+E + L KE++L + SI+T D++ D+ A +
Sbjct: 158 ERLDPEVNESTIGRLKKELNLPVSSILTLDDIVDFTKSDLTAAESK 203
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 107 ISVMTSRLVMMD-SISSDTSFTSQGMNSSSTPLS 9
+ ++T+R M ++S+DTS + M +S+TP+S
Sbjct: 45 LQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMS 78
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 301 GPLENMXX-YLKVFKINCQFFYKTNRKLGSYY 393
G +EN Y++ ++++C+ F R LG YY
Sbjct: 500 GDIENNPKHYVEAWELSCKRFAPAQRSLGKYY 531
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -1
Query: 149 FLYSSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
F+Y P+ +T + +S+L ++DSI ++ G S+ I
Sbjct: 247 FIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADI 294
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -1
Query: 140 SSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SS AST+ SV+ S M S SS T+ +S +SSS+PLS
Sbjct: 27 SSAAASTSLSSSSVIPSSSSSMLSSSSATAISS---SSSSSPLS 67
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 28 EFMPWLVKEVSLEIESIITSRDVITEIXRD---VVEARGELYRNV 153
E+ L+ E EIE++ + + EI RD ++ +GEL N+
Sbjct: 166 EYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNI 210
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 498 MPI*CMYI*SSAYLERHNNSNXHYTHD 418
+PI C+++ SS L RHNN + H+
Sbjct: 347 IPIRCIHLQSSEELARHNNVFRYIHHN 373
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 140 SSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S+T+ S +S S SS +S +S +SSS+ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 130 RGELYRNVAEREENEQGRNEP-EDSITHPSGVS 225
+ ++R + +ENE+ NEP E S + P+ VS
Sbjct: 291 KSAVFREDKQNDENEKNENEPIEASESAPTNVS 323
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 155 ATFLYSSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
++++YS P ++T+ S S + S T+ T +SSST +S
Sbjct: 118 SSYVYSVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVS 166
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 140 SSPLASTTSRXI--SVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SSP +S++S S+ TS + S SS TS + +SSST S
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 49 KEVSLEIESIITSRDVITEIXRDVVEARGELYRNVAEREENEQ 177
KEV L +S I+ R R E R E YR AER+ EQ
Sbjct: 526 KEVLLTFKSEISKR----RKQRKAQEMREERYRQRAERDTEEQ 564
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITSRDVITEIXRDVVEAR 132
E +PW+ K +E +++ +D+I+ + + + R
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNR 55
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 52 EVSLEIESIITSRDVITEIXRDVVEARGELYRNVAEREENEQGRNE 189
+ S + ++ T +D TEI D + EL ERE E+ +NE
Sbjct: 110 DFSTDFSTLSTKKDE-TEIAPDCLHYIAELLFQKKEREVKEKWKNE 154
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 64 EIESIITSRDVITEIXRDVVEARGELYRNVAEREENEQGRNEPED 198
EI + +RD EI ++ E R RN+ E E EQ +NE +
Sbjct: 508 EINELQDNRDAALEIVTNIFEQR----RNINEL-EREQSQNEDHE 547
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 140 SSPLASTTSRXISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
SS ++STTS S S S SS +S +S +SSS+ S
Sbjct: 126 SSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSS 169
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 128 ASTTSRXISVMTSRLVMMDS--ISSDTSFTSQGMNSSSTPLS 9
+ST SV+ S + S ++S T TS + +SSTP+S
Sbjct: 3440 SSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPIS 3481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,744
Number of Sequences: 5004
Number of extensions: 28487
Number of successful extensions: 100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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