Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1508
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085...    31   0.80 
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    30   1.1  
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323...    29   3.2  
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    29   3.2  
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446...    28   4.3  
10_01_0129 + 1535823-1537196                                           27   7.5  
04_04_1588 - 34633057-34633824                                         27   9.9  
01_05_0490 + 22672241-22674679                                         27   9.9  

>11_05_0034 +
           18507023-18507243,18507347-18507473,18508463-18508531,
           18508620-18508763
          Length = 186

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 18/33 (54%), Positives = 18/33 (54%)
 Frame = -2

Query: 256 HLRDALPPPPQTRRRGE*CCPRARSSPVHSPLS 158
           HLR ALP PP   R G    P A SSP H  LS
Sbjct: 15  HLRRALPSPP---RAGALLLPAAASSPAHRFLS 44


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  EFMPWLVKEVSLEIESIITSRDVITEIXRDVVEARGELY-RNVAEREE--NEQGRNEPED 198
           EFM WL+  +  +++S   +R +I +  +  +E   E + +++ E++E  +EQ  +   D
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDGDEQNGDAGSD 397

Query: 199 SITHPSGV 222
            +T  S V
Sbjct: 398 IVTETSRV 405


>08_02_0869 -
           22031889-22032017,22032114-22032204,22032289-22032389,
           22033262-22033303,22033393-22033491,22033616-22033753,
           22033853-22034428,22034897-22035070,22035155-22035290,
           22035694-22035725,22036873-22037125,22037216-22037304,
           22037771-22037824,22038801-22038992,22039065-22039229
          Length = 756

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 106 IXRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSGVS 225
           I +++VE +G+L R V  RE+++    EP  SI+  SG S
Sbjct: 313 IKKEIVE-KGQLVRAVLVREDDKPSSVEPLTSISVASGAS 351


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 268 ATSCHLRDALPPPPQTRRRGE*CCPRARSSPV 173
           ATSC  RD  PPPP + ++      R RS P+
Sbjct: 604 ATSCLPRDDPPPPPTSAKKAGFLRRRRRSPPL 635


>02_04_0090 -
           19643182-19643322,19644192-19644335,19644563-19644626,
           19644710-19644796,19645371-19645513,19645706-19645771,
           19645954-19646046,19646165-19646230,19646363-19646433,
           19646882-19646982,19647217-19647317,19647421-19647528,
           19647639-19648064
          Length = 536

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -2

Query: 262 SCHLRDALPPPPQTRRRGE*CCPRARSSPVHSPL 161
           S HLR A PPPP  R R     P    SP H  L
Sbjct: 8   SLHLRLAPPPPPHRRGRPPRHAPFLPLSPYHHHL 41


>10_01_0129 + 1535823-1537196
          Length = 457

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 247 DALPPPPQTRRRGE 206
           D  PPPP+ RRRGE
Sbjct: 64  DGQPPPPRRRRRGE 77


>04_04_1588 - 34633057-34633824
          Length = 255

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 238 PPPPQTRRRGE*CC 197
           PPPP+ R RG  CC
Sbjct: 54  PPPPRRRSRGRRCC 67


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 238 PPPPQTRRRGE*CCPRARSSPVHSPLSQQR 149
           PPPP TRR  +   P +R +P   P  QQ+
Sbjct: 644 PPPPTTRRSRKPPQPPSRPAPPPPPPPQQQ 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,055,550
Number of Sequences: 37544
Number of extensions: 171259
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)