Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1507
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0338 + 22479804-22480651,22480764-22482954                       31   0.79 
10_04_0018 - 7633860-7634134,7634525-7634858                           28   5.6  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    28   5.6  
10_01_0338 + 3717089-3717205,3717725-3718297                           28   7.4  
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903...    27   9.7  

>11_06_0338 + 22479804-22480651,22480764-22482954
          Length = 1012

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 317 QYGQDRPKTFRLLYVKSCLRQETLIELLNFALIYSIWRACEQDNSIGRSSTRHRPPVH 144
           QYG++ P    L     C R+   +E       YS++R C  D  +   S+   P  H
Sbjct: 93  QYGEEAPNAGLLRKAMRCFRRRRSLEYNIPRTAYSLYRECSSDPRLELPSSELMPSPH 150


>10_04_0018 - 7633860-7634134,7634525-7634858
          Length = 202

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 180 WAEFYEAPPASSPEISLIYK 121
           W EFYE PP+S P  +  Y+
Sbjct: 13  WGEFYEPPPSSEPIFTTGYE 32


>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
            3299528-3299531,3299814-3299949,3300034-3300090,
            3301689-3301786,3301876-3301947,3302056-3302228,
            3302552-3302698,3303113-3303336,3305300-3305306,
            3305634-3305800,3306033-3306068,3306787-3307004,
            3307115-3307172,3307761-3307842,3308045-3308207,
            3308594-3308598,3308700-3308885,3308969-3309548,
            3309642-3309774,3309880-3309948,3310184-3310395,
            3310654-3310891,3311228-3311386,3311501-3311926,
            3312010-3312447,3312593-3312712,3312784-3313266,
            3313471-3314009,3314178-3314667,3314836-3314904,
            3315735-3315839,3315940-3316158,3316254-3316508,
            3316602-3316651,3317175-3317284,3317372-3317454,
            3317560-3317772,3317870-3318040
          Length = 2391

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 188  CLARKPSKLNKLTQNLITLLTFPDANNS 271
            C+ RKP   +KLT+NL T LT  DA+ +
Sbjct: 1482 CVGRKPGPNDKLTKNLCT-LTCTDASET 1508


>10_01_0338 + 3717089-3717205,3717725-3718297
          Length = 229

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 174 EFYEAPPASSPEISLIYKFIS---SMCV 100
           EFYE PP+S P ++  Y+  S   SMCV
Sbjct: 14  EFYEPPPSSEPILTPGYEICSEFISMCV 41


>11_06_0115 +
           20288220-20288303,20289223-20289706,20290160-20290393,
           20291811-20292770,20292931-20293404,20293406-20294664
          Length = 1164

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 68  FSNSPYTNTNDTHIDDINLYINEISGEL 151
           F + PY  +  T + DINL +N ++GE+
Sbjct: 94  FGSVPYEISMLTSLTDINLRVNNLTGEI 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,996,732
Number of Sequences: 37544
Number of extensions: 227811
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)