Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1504
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   4.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   8.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 213 RYVSEFNISSCST 175
           RYV E N+++C T
Sbjct: 192 RYVPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 213 RYVSEFNISSCST 175
           RYV E N+++C T
Sbjct: 68  RYVPEGNMTACGT 80


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 230 IDXTRVDMFPNL 195
           ++ TRVDM+ N+
Sbjct: 641 VNLTRVDMYANM 652


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 64 SIKVFTSAXL*NW 26
          SIK+ T+  L NW
Sbjct: 4  SIKIITTTGLENW 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,671
Number of Sequences: 438
Number of extensions: 522
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)