Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1498
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.27 
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   3.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   5.9  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    24   5.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    24   5.9  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    24   5.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   5.9  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 250 YALRRRLSFSHPKVSGTLSEIKIPFSHFNEPI 155
           YAL R +SF+ P+V+ +L E+    S FN P+
Sbjct: 589 YALSRLVSFAPPEVTFSLPELDFLTSVFNFPL 620


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 163 EPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEYICTL*FRK 35
           E IP  Q K   L+    L  LLK +Y +    +   T  FRK
Sbjct: 62  ETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRK 104


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 299 HACNCSICGRMQAA 340
           ++C+CS+CGR + A
Sbjct: 295 YSCSCSVCGRKRLA 308


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 123  NTALFLRHC*KGYIWNEIIQSIYVH 49
            N A  +R C + ++WNE +  +YVH
Sbjct: 1340 NMAKVIRACDQMHLWNEAV-FLYVH 1363


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 231 YHSPTLKLAEPCPRSKSRLVTLMS 160
           ++SPTL +  P P S+  L  L+S
Sbjct: 32  HYSPTLSIRNPAPPSQLSLPLLLS 55


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 202 TLSEIKIPFSHFNEPIPYTQIKSMSLQYRFV 110
           T S  K PF  F   +P+ Q  S+ L   +V
Sbjct: 500 TCSSCKYPFQFFINKLPFYQSPSLPLSATYV 530


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 181 PFSHFNEPIPYTQIKSMSLQYRFVLATL 98
           P  H N+P P   ++S  L +  V  TL
Sbjct: 288 PSLHLNDPFPSVDLQSNELSHHNVRTTL 315


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 231 YHSPTLKLAEPCPRSKSRLVTLMSRYLIHK*SP*AYNTALFLRHC*KGYIWNE 73
           +H    KL      S  + V L++  L+ K    +   +L L H  KG+ WN+
Sbjct: 597 WHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNK 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,592
Number of Sequences: 5004
Number of extensions: 27137
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)