Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1498
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006...    29   1.3  
11_01_0067 + 539152-540063                                             27   3.1  
12_02_0357 + 17941898-17943691                                         26   9.3  
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    26   9.3  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    26   9.3  
04_03_0164 + 12136693-12137589                                         26   9.3  

>08_02_0306 -
           15599409-15599657,15600326-15600475,15600574-15600663,
           15600776-15601126,15601389-15601430,15601523-15601600
          Length = 319

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 193 EIKIPFSHFNEPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEYIC 53
           ++ +  SH    I   Q K+    ++  +ATLLKGI + RN T ++C
Sbjct: 137 KLHLVLSHLRY-IKIFQCKTTMAAFQDAVATLLKGIPIVRNLTLHVC 182


>11_01_0067 + 539152-540063
          Length = 303

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 249 MPSGVVYHSPTLKLAEPCPRSKSRLVTLMSRYLIH 145
           +P+G V H+P L + +P P  +   + +  R L H
Sbjct: 188 LPAGQVCHNPQLAIVDPRPARRRTFLGVHPRRLCH 222


>12_02_0357 + 17941898-17943691
          Length = 597

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 280 PSVAINACVQLLDLWTHAGCVXA 348
           P+ +IN  V L+ +W +AG V A
Sbjct: 372 PAKSINTFVSLISIWNYAGRVGA 394


>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
            10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 102  VARTKRYCKLMDFICV*GIGSLK*LNGILISDRVPLTLG 218
            +ART  Y  L+D +   G G++   +  LI+  +P T+G
Sbjct: 985  MARTSGYSVLLDEVIATGQGAILNFSWNLINGEIPETIG 1023


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 7   TTSQVYNLRIYEITMYIYTLYDFVPYISLSTMSQEQSGIVSSWTLFVYKVSAH 165
           +TS+ Y++        +   Y   PYIS S  + + + + S W+   ++ S H
Sbjct: 314 STSRAYSISSAPRNYNLQRYYTNSPYISTSRSNVDLANMSSQWSHTPHQASMH 366


>04_03_0164 + 12136693-12137589
          Length = 298

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 337 SLHASTDRAIARMR*WLHSAQRGIYCRNIYALRRRLSFSHPK 212
           SLH     +I R+  ++H+ +  +  R  +AL RR+ F  P+
Sbjct: 84  SLHHLNPNSIVRIANFIHACEAFLGIRPHFALFRRIFFLKPQ 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,223
Number of Sequences: 37544
Number of extensions: 164970
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)