Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1498
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 31 0.23
AF047657-12|AAK18941.3| 367|Caenorhabditis elegans Serpentine r... 29 0.91
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 29 1.2
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 29 1.2
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 29 1.2
Z81549-3|CAB04468.1| 288|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81100-2|CAB03192.2| 332|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 26 8.5
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 26 8.5
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 26 8.5
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 25 NLRIYEITMYIYTLYDFVPYISLSTMSQEQSGIVSSWTLFVYKVSAH 165
+L +Y T+ Y YD+ PY++ SQ Q + + T+ ++ V+ +
Sbjct: 154 HLAVYNETLAHYPEYDYTPYLNFGGFSQAQKVYLDNSTVAMFLVTLY 200
>AF047657-12|AAK18941.3| 367|Caenorhabditis elegans Serpentine
receptor, class w protein4 protein.
Length = 367
Score = 29.1 bits (62), Expect = 0.91
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 152 LYTNKVHELTIPLCSCDIVERDI 84
L TN V+ L I +CSCDI+ +
Sbjct: 58 LRTNSVYRLMIGICSCDIISHTL 80
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -3
Query: 232 LSFSHPKVSGTLSEIKIPFSHFNEPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEY 59
++ S+ K + + +PF F P+P I + + + ++L YM HT Y
Sbjct: 138 VAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGY 195
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -3
Query: 232 LSFSHPKVSGTLSEIKIPFSHFNEPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEY 59
++ S+ K + + +PF F P+P I + + + ++L YM HT Y
Sbjct: 128 VAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGY 185
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -3
Query: 232 LSFSHPKVSGTLSEIKIPFSHFNEPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEY 59
++ S+ K + + +PF F P+P I + + + ++L YM HT Y
Sbjct: 128 VAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGY 185
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -3
Query: 232 LSFSHPKVSGTLSEIKIPFSHFNEPIPYTQIKSMSLQYRFVLATLLKGIYMERNHTEY 59
++ S+ K + + +PF F P+P I + + + ++L YM HT Y
Sbjct: 138 VAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGY 195
>Z81549-3|CAB04468.1| 288|Caenorhabditis elegans Hypothetical
protein F55C9.4 protein.
Length = 288
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 114 LFLRHC*KGYIWNEIIQSIYVHCNFVN 34
LFL+H KG NE+++++YV +VN
Sbjct: 209 LFLKHWIKGA--NEVVETLYVEIEYVN 233
>Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical
protein K04D7.6 protein.
Length = 360
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 TMYIYTLY-DFVPYISLSTMSQEQSGIVSSWTLFVY 150
T + YTLY F + L +E+ + SSWTLF Y
Sbjct: 110 TSFHYTLYLQFTSSVLLYVFLREKD-LKSSWTLFYY 144
>Z81100-2|CAB03192.2| 332|Caenorhabditis elegans Hypothetical
protein K08G2.5 protein.
Length = 332
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 1 FFTTSQVYNLRIYEITMYIYTLYDFVPYISLSTMSQEQSGIVSSWTLFVYKVSA 162
FF + +VY+ ++ +TM + F YI +S + + V + LF++ V A
Sbjct: 8 FFASDEVYSKLLHSLTMIEIVTHSFGAYIIIS-KTPKMFESVKAGMLFLHFVGA 60
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 177 NGILISDRVPLTLGWENDXXXXXAYILRQYIPR 275
NGI ++DRV LGW N L Y PR
Sbjct: 751 NGIQVADRVYSFLGWSNSQMRDQGCYL--YAPR 781
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 177 NGILISDRVPLTLGWENDXXXXXAYILRQYIPR 275
NGI ++DRV LGW N L Y PR
Sbjct: 751 NGIQVADRVYSFLGWSNSQMRDQGCYL--YAPR 781
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 238 RRLSFSHPKVSGTLSEIKIP 179
R L + PK SGTLS I+IP
Sbjct: 385 RGLVIAKPKQSGTLSNIEIP 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,014
Number of Sequences: 27780
Number of extensions: 149501
Number of successful extensions: 367
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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