Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1498
(348 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 0.78
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 0.78
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 0.78
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 3.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 5.5
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 20 7.3
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 20 7.3
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 20 9.6
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 20 9.6
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 20 9.6
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 20 9.6
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 20 9.6
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 0.78
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIYMPSGVV 232
AC + R Y+ IY+PSG++
Sbjct: 211 ACEIQFVRSMGYYLIQIYIPSGLI 234
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 0.78
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIYMPSGVV 232
AC + R Y+ IY+PSG++
Sbjct: 211 ACEIQFVRSMGYYLIQIYIPSGLI 234
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.4 bits (48), Expect = 0.78
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIYMPSGVV 232
AC + R Y+ IY+PSG++
Sbjct: 150 ACEIQFVRSMGYYLIQIYIPSGLI 173
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 3.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 189 SKSRLVTLMSRYLIHK 142
S SRL+ L +++L+HK
Sbjct: 492 SDSRLLDLCTKFLMHK 507
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.6 bits (41), Expect = 5.5
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Frame = +2
Query: 53 TYILCMISFHIYPF--QQC 103
T + CM+ H YP Q C
Sbjct: 157 TTLACMMDLHYYPLDSQNC 175
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 20.2 bits (40), Expect = 7.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 189 ISDRVPLTLGW 221
I D VPLTLG+
Sbjct: 80 IQDGVPLTLGY 90
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 20.2 bits (40), Expect = 7.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 220 GRMIDDAGGHIYCGNIS 270
G +I++ GG I C IS
Sbjct: 273 GIVIEELGGEIQCVKIS 289
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 19.8 bits (39), Expect = 9.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 126 YNTALFLRHC*KGYIWNEIIQSIYVHCNFVNS*IIHL 16
Y T FL C ++ ++ ++V C F+ + +I L
Sbjct: 197 YTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPL 233
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIY 250
+C +GY AG+ A IY
Sbjct: 495 SCHSGYKDSFAGWTAPIY 512
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIY 250
+C +GY AG+ A IY
Sbjct: 495 SCHSGYKDSFAGWTAPIY 512
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 303 ACVNGYTRLSAGYIAAIY 250
+C +GY AG+ A IY
Sbjct: 495 SCHSGYKDSFAGWTAPIY 512
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 19.8 bits (39), Expect = 9.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 126 YNTALFLRHC*KGYIWNEIIQSIYVHCNFVNS*IIHL 16
Y T FL C ++ ++ ++V C F+ + +I L
Sbjct: 197 YTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPL 233
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,567
Number of Sequences: 438
Number of extensions: 2091
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7936320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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