Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1497
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   1.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   2.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   3.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    24   5.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   5.0  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    23   6.7  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    23   8.8  

>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 279 MIFLYQKWFH*NHVCLYQETLILS 208
           +I LY ++ H NH+CL  E L ++
Sbjct: 193 LIRLYDQFMHKNHLCLVFELLSIN 216


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = +3

Query: 132 TTLNDDIFVLDVSEDLELENFKAFXEIE 215
           TT  +DI  +D+ ++ + EN++ + +++
Sbjct: 264 TTTREDIEAMDIEKERKRENYEEYKQVD 291


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 135 TLNDDIFVLDVSEDLELENFKAFXEIESGFPGKDIHDFNGTTSDT 269
           ++++D+F    S+++EL +       E   P K ++  NGT  +T
Sbjct: 78  SVSNDMFKHVYSQNVELNHKTQVDFTEQLIPKKSLNKLNGTLRET 122


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 286 SFNDFFVSEVVPLKSCMSLPGNPD 215
           +FN+FF  ++ P     + P NPD
Sbjct: 752 TFNEFFYRKLKPGSRPCAFPDNPD 775


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 IESGFPGKDIHDFNGTTSDTKKSLKE 287
           + S F   +IHDF+G   +  K ++E
Sbjct: 506 LRSMFTNAEIHDFDGDEEEVFKDVEE 531


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 96  WVIQKITMKVTVTTLNDDIFVLDVSEDLE--LENFKAFXEIESGF--PGKDIHDF 248
           W++ K+  ++  T LN D  V   +  L+  L+  K +   +  F  P K++  F
Sbjct: 196 WLLDKLLNRILFTLLNSDSLVNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYF 250


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 68  NGTFTLRYLLGYPKNHDE 121
           N T  +R++LG P+N  E
Sbjct: 97  NDTVDVRFILGLPENEQE 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,806
Number of Sequences: 5004
Number of extensions: 17037
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)