Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1497
(287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552... 40 3e-04
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 30 0.34
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 27 1.8
02_01_0323 - 2201294-2202337 26 4.2
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 26 5.6
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 26 5.6
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437... 25 9.8
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 25 9.8
>02_01_0742 +
5524149-5524214,5524609-5524641,5524750-5524880,
5525174-5525282,5525406-5525522,5525896-5525961,
5526314-5526376,5526459-5526503,5526690-5526751,
5526974-5527067,5527375-5527467,5527561-5527630,
5527816-5527892,5527976-5528033,5528135-5528166,
5528245-5528376
Length = 415
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 MKVTVTTLNDDIFVLDVSEDLELENFKAFXEIESGFP--GKDIHDFNG 254
MKVTV T ++ I +DV D +EN KA E+E+ P + +H FNG
Sbjct: 1 MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLH-FNG 47
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 156 VLDVSEDLELENFKAFXEIESGFPGKDIHDFN 251
V+DV +D+ ++ F E+ + FPGK++ D +
Sbjct: 874 VMDVQDDVIIDAKSYFRELHNIFPGKEVQDLD 905
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 87 DTYWVIQKITMKVTVTTLNDDIFVLDVSEDLELEN 191
DT+W + T T LND+I D + D +L++
Sbjct: 1257 DTHWEEKNGTYMTVDTALNDEIHTKDGTSDYDLQD 1291
>02_01_0323 - 2201294-2202337
Length = 347
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 108 KITMKVTVTTLNDDIFVLDVSE 173
++T+ T T+ DD+++LDV +
Sbjct: 114 QVTLPATSVTVGDDLYILDVDD 135
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 87 DTYWVIQKITMKVTVTTLNDDIFVLDVSEDLELEN 191
DT+W + T T LN++I D + D +L++
Sbjct: 210 DTHWEEKNGTYMTVDTALNEEIHTKDGTSDYDLQD 244
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +3
Query: 117 MKVTVTTLNDDIFVLDVSEDLELENFKAFXEIESG---FPGKD---IHDFNGTTSDT 269
MKV++ TL F +DV ++ + K E+ G +P IH N +DT
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDT 57
>11_08_0099 +
28342765-28342872,28343016-28343167,28343461-28343705,
28343790-28343921,28344047-28344973,28345057-28345187
Length = 564
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 129 VTTLNDDIFVLDVSEDLELENFKAFXEIESGFPGKDIHDFNGTTSDTK 272
V T+N+ F++ + L+ + FP +H FN T S K
Sbjct: 384 VGTINNVTFIMPSTPILQAHYYNIPGVFTEDFPATPLHKFNYTGSGPK 431
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 216 SGFPGKDIHDFNGTTSDTKKSLK 284
+ FP +D+HD++G S LK
Sbjct: 337 NAFPRRDLHDYSGDISSAPLVLK 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,194,420
Number of Sequences: 37544
Number of extensions: 91737
Number of successful extensions: 264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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