Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1496
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   2.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.4  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 381 LPSGIASLDFSNIQSPTTSANHQWLRETRLLKKTHA*LERCFFXPRSTGIT*T 539
           + S ++SL F+N  S   +      RE +L+   +A  E  FF P+S  I  T
Sbjct: 1   MDSPLSSLSFTNTLSGKRNVLRPAARELKLMSDRNANQELDFFFPKSKHIAST 53


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 312 DVIILLHMVNS-AQNLSVN-DSSQALPSGIASLDFSNIQSPTTSANHQWLR 458
           +V I + + N  A++L V+ D S+  P+  A++ F+N    T    H W R
Sbjct: 568 EVPIAMEVANEIAKSLEVSSDFSETCPACEATVQFNNTSLATCDNGHVWRR 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,039
Number of Sequences: 5004
Number of extensions: 53924
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)