Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1496
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552...    45   7e-05
09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857...    31   0.88 
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797...    31   0.88 
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    29   2.7  
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468...    29   4.7  
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136...    28   6.2  
11_04_0105 - 13505786-13505800,13505940-13506043,13506421-135066...    28   8.2  

>02_01_0742 +
           5524149-5524214,5524609-5524641,5524750-5524880,
           5525174-5525282,5525406-5525522,5525896-5525961,
           5526314-5526376,5526459-5526503,5526690-5526751,
           5526974-5527067,5527375-5527467,5527561-5527630,
           5527816-5527892,5527976-5528033,5528135-5528166,
           5528245-5528376
          Length = 415

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +1

Query: 118 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHF 252
           MKVTV T ++ I  +DV  D  +EN KA  E+E+  P +   LHF
Sbjct: 1   MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLHF 45


>09_02_0399 -
           8569478-8569795,8570219-8570287,8570760-8570848,
           8571446-8571542,8571920-8571991
          Length = 214

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 303 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 416
           H G ++ L H++  A +L++N  +Q + S   S+D  N
Sbjct: 123 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 160


>03_05_0149 -
           21278418-21278747,21279170-21279238,21279709-21279797,
           21280395-21280467,21280846-21280917
          Length = 210

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 303 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 416
           H G ++ L H++  A +L++N  +Q + S   S+D  N
Sbjct: 115 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 152


>02_01_0319 -
           2148788-2148892,2149474-2149557,2149643-2149723,
           2150303-2150480,2150811-2150954,2151048-2151094,
           2151353-2151409,2151566-2151664,2151867-2151989,
           2152083-2152205,2152594-2152707,2152972-2153160,
           2153412-2153578,2153904-2153988,2155431-2155628,
           2155978-2156175
          Length = 663

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 527 HYLNRNNXRLARCSTNWXFRSICCW 601
           HY + N   L  CS N     +CCW
Sbjct: 263 HYEDENTQYLCICSVNKALNMVCCW 287


>03_01_0640 -
           4683970-4684481,4685197-4685343,4685606-4686764,
           4686851-4686907
          Length = 624

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 LHMVNSAQNLSVNDSSQALPSGIASLDFS 413
           L  VN + NL V  SS +LP G+ SLD S
Sbjct: 395 LRAVNLSGNLIVQISSGSLPKGLHSLDLS 423


>11_06_0102 +
           20112731-20112928,20113314-20113514,20113606-20113695,
           20114269-20114457,20115375-20115387,20115824-20115990,
           20117334-20117522,20118940-20119053,20120912-20121010,
           20122368-20122490,20122579-20122701,20123179-20123277,
           20124786-20124842,20125136-20125182,20125296-20125439,
           20125540-20125717,20126318-20126398,20126480-20126563,
           20126624-20126629
          Length = 733

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 527 HYLNRNNXRLARCSTNWXFRSICCW 601
           HY + N+  L  C  N     +CCW
Sbjct: 333 HYEDENSQYLCLCPVNKALNMVCCW 357


>11_04_0105 -
           13505786-13505800,13505940-13506043,13506421-13506649,
           13506661-13506954,13507139-13507338,13507531-13507585
          Length = 298

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 529 MPVDLGXKKHLSNYAWVFFNRRVSRSH 449
           +P DL    HL N A++F N RV   H
Sbjct: 229 VPTDLPWDVHLDNAAYIFSNARVIYKH 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,422
Number of Sequences: 37544
Number of extensions: 315607
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)