Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1494
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 108 7e-25
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 40 4e-04
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.17
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.68
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.1
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 27 2.1
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 3.6
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 6.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.3
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 8.4
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 8.4
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 108 bits (259), Expect = 7e-25
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Frame = +2
Query: 68 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 244
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 245 MATTRYTKKLQV*L*VIQYSVLESLCQ*NLVPVSWVPSLTVFSVPSRTSTS*LKSIYIPK 424
T + ++ L P P + +SIYIP+
Sbjct: 68 KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127
Query: 425 GINVPSLAREVDWEFNP-LNVKVGSHIYRGDLYGIGHENTLVK-HRMLVPGPKPKGT 589
GIN SL RE W+F P ++++G H+ GD++G EN+L H++++P P+ +GT
Sbjct: 128 GINTESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLP-PRARGT 183
Score = 85.0 bits (201), Expect = 7e-18
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQVHLHPQG 426
QVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +Q P+G
Sbjct: 72 QVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRG 128
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQVHLHP 420
T G+ G V+ TG P+S+ +GPG LG I + I P+ + + V P
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSP 162
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 235 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 83
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 273
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Frame = -3
Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWWWP 246
+ S P++P P + VT WWWP
Sbjct: 139 VESLFPPQLPDWEKAFHDIPKKEVAHELVTSYFQHVNWWWP 179
>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 157
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 319 LSVELGPGILGSIFDGIQRPLKDINELTQVHLHPQGYQR 435
+++EL L + D + L D+++ Q HP GYQ+
Sbjct: 1 MALELTEHQLNKLRDFLDEILLDVSQKYQKKFHPGGYQK 39
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 565 DQHPVLDQSVLVSNXIQISPV 503
+Q P+ D+S+++ I+ISPV
Sbjct: 51 EQEPLFDESIVLGYSIKISPV 71
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 399
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 489 TLTFNGLNSQSTSLAREGTLI 427
T FNGL + TSLA + TL+
Sbjct: 24 TFGFNGLGTSRTSLAPQRTLV 44
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,692
Number of Sequences: 5004
Number of extensions: 57571
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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