Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1494
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...   121   3e-28
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    36   0.029
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    31   0.47 
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    31   0.47 
Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    28   5.8  
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score =  121 bits (292), Expect = 3e-28
 Identities = 75/165 (45%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
 Frame = +2

Query: 107 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATTR-YTKKLQV* 283
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD AT + Y +   V 
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGV- 62

Query: 284 L*VIQYSVLES--LCQ*NLVPVSWVPSLTVFSVPSRTSTS*LKSIYIPKGINVPSLAREV 457
              I   VL +       L P            P +      +SIYIPKG++  +L+RE 
Sbjct: 63  --TIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREA 120

Query: 458 DWEF-NPLNVKVGSHIYRGDLYGIGHENTLVKHRMLVPGPKPKGT 589
            W+F    +++VG H+  GD+ G   EN L+KH++L+P P   GT
Sbjct: 121 RWDFVVSKDLRVGGHVTGGDIIGTVDENLLIKHKILLP-PSACGT 164



 Score =  101 bits (243), Expect = 3e-22
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = +1

Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQVHLHPQG 426
           QVYEETSGVT+GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQ    P+G
Sbjct: 54  QVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKG 110


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 387
           T G+  G PV  TG P+ + +GP  LG I + I  P+ +
Sbjct: 125 TEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDE 163


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 VYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           V+     +  GD V RTG  + V +G G+LG + D +  P+
Sbjct: 76  VFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 VYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           V+     +  GD V RTG  + V +G G+LG + D +  P+
Sbjct: 103 VFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143


>Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical
           protein R09D1.14 protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = +2

Query: 104 NEERFGYVFAVSGPVVTAEKMSG--SAMYELVRVGYNELVGEIIRLEGDMATTRYTKKLQ 277
           N+   GY FA    V+T++++S    A++  V +  +   G+ ++++GD+A  R+T  ++
Sbjct: 42  NKRIIGYYFATQTSVITSDQVSNLTHAVFAFVNITSD---GQ-LQIDGDLAKNRFTNLIE 97

Query: 278 V 280
           +
Sbjct: 98  I 98


>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = +2

Query: 89  IANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATTRYTK 268
           + NE+ +  F   F  S PV+ A  ++     +++ +G  +L+   ++    +   R+  
Sbjct: 98  LLNEDRDVEFVRGFTTSSPVLKASPVASEDFSKILNIGSRDLLSYYVKQVESVEKQRFKN 157

Query: 269 KLQV 280
            LQ+
Sbjct: 158 ALQI 161


>Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical
           protein R09D1.8 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +2

Query: 104 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATTRYTKKLQV 280
           N+   GY FA    V+T +++  S +   V    N      ++++GD+A  R+T  +++
Sbjct: 84  NKRIIGYYFATQTSVITRDQV--SKLTHAVFAFVNMTSDGHLQIDGDLAKNRFTNLIEI 140


>Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical
           protein R09D1.6 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +2

Query: 104 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATTRYTKKLQV 280
           N+   GY FA    V+T +++  S +   V    N      ++++GD+A  R+T  +++
Sbjct: 82  NKRIIGYYFATQTSVITRDQV--SKLTHAVFAFVNMTSDGHLQIDGDLAKNRFTNLIEI 138


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 265 RIPGGGHVTFKTDNLTDEFIVTDTDQLVHSRSGH 164
           R+   G + +  DN T EF+  DTD  V     H
Sbjct: 287 RVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNH 320


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 335 VPVSWVPSLTVFSVPSRTSTS-*LKSIYIPKGINVPS 442
           V  SWV + T FS    +STS  L  I +P+ + VPS
Sbjct: 92  VTSSWVQNATTFSATIDSSTSQKLSQIELPEHLTVPS 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,298
Number of Sequences: 27780
Number of extensions: 337121
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)