Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1491
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.67 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 60   VHLSKQKQTQDKMC-DRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFD 236
            +H ++ K+T DK+C   + V+  A     ++  +       +EK     + A  +KK  +
Sbjct: 1689 IHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEK----NEAAMKLKKRIE 1744

Query: 237  KKYNP 251
            K  NP
Sbjct: 1745 KGANP 1749


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 182 ERLSCTVNSILLHLFAH 132
           ER+ C+ NS++ H++ +
Sbjct: 42  ERVYCSRNSLMTHIYTY 58


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 294 HTRLXTXSTSTWDRWLYCSLRAXRPFS-IXSIHVLAADA 407
           HT++   ST   + W Y ++   R F  I ++ VL   A
Sbjct: 497 HTKMLEDSTKVKEDWKYVAMVLDRLFLWIFTLAVLVGTA 535


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 294 HTRLXTXSTSTWDRWLYCSLRAXRPFS-IXSIHVLAADA 407
           HT++   ST   + W Y ++   R F  I ++ VL   A
Sbjct: 497 HTKMLEDSTKVKEDWKYVAMVLDRLFLWIFTLAVLVGTA 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,484
Number of Sequences: 438
Number of extensions: 2172
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)