Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1490
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   3.7  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.7  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +1

Query: 322 LMLMVQLTGKLLHTKQALT*VTKKALAQVLN*VQTDLVDLEILLTIYKIQEK*IAKFV*T 501
           + L V+  GK + TK+     T   + +++     D   +  L      +E  ++ F   
Sbjct: 198 IYLPVKKVGKFIPTKRTEGVSTSDLITRIIR--DYDQYVMRNLARGVNRKELNVSLFKKN 255

Query: 502 ELH*REHLEICQHTAREEPGNGSTILKRAIKSFI 603
           EL  R H+++ + T R    + +  LK  IKSF+
Sbjct: 256 ELDLRHHIKVLRDTLRNHWVSTTRDLKADIKSFL 289


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 482 LPNLYKRSFTEENIWKSVNIQQEKNL 559
           LP+   +   EE++WK + + QE  L
Sbjct: 173 LPSEVTKDTAEESVWKDIGLDQETGL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,275
Number of Sequences: 5004
Number of extensions: 39707
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)