Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1490
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875...    27   8.7  

>02_02_0300 -
           8746526-8747224,8749033-8749089,8749414-8749650,
           8750061-8750172,8750258-8750538,8752032-8752244,
           8753105-8753636,8753871-8753899
          Length = 719

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 520 VLFSEAPFIQIWQFIFLVSC 461
           VL  + PF+Q W  IF++SC
Sbjct: 71  VLDPQGPFLQRWNKIFVISC 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,299
Number of Sequences: 37544
Number of extensions: 203224
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)