Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1488
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.34
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 27 1.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 1.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 1.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 2.4
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 4.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 7.3
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 25 9.6
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 25 9.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 279 ASSSPEPCTPT-CTSSVRCPPTG 344
+SSSP P T T CT+S PPTG
Sbjct: 103 SSSSPLPSTSTSCTTSTSIPPTG 125
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 282 SSSPEPCTPT-CTSSVRCPPTGKT 350
SSSP P T T CT+S PPTG +
Sbjct: 328 SSSPLPSTSTSCTTSTSIPPTGNS 351
Score = 28.3 bits (60), Expect = 0.78
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 282 SSSPEPCTPT-CTSSVRCPPTGKT 350
+SSP P T T CT+S PPTG +
Sbjct: 274 NSSPLPTTSTSCTTSTSIPPTGNS 297
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 282 SSSPEPCTPT-CTSSVRCPPTG 344
+S+P P T T CT+S PPTG
Sbjct: 161 NSNPLPTTSTSCTTSTSIPPTG 182
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 282 SSSPEPCTPT-CTSSVRCPPTGKT 350
SSSP T T CT+S PPTG +
Sbjct: 382 SSSPLLSTSTSCTTSTSIPPTGNS 405
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 403 SNTTDLEKKVGRWKQRNGGGWLKKKDENENQLKRTKAGN 519
SN+T+LEK+ ++ G LK +E+E L KAGN
Sbjct: 289 SNSTELEKQKAYYRLGCAQGLLKNFEESEKAL--AKAGN 325
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 391 W*PPSNTTDLEKKVGRWKQRN---GGGWLKKKDENENQLKRTK 510
W P N EK + +WK+R G L+ D +N+ K+ K
Sbjct: 54 WEPEQNLFGAEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMK 96
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 385 TLDQSHLNRVT-YVLPVGGHRTLDVQVGVHGSGLELARHRYQI 260
TL++S+L R+ V H + V VG+HG +E A Y +
Sbjct: 150 TLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEAAIETYNL 192
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +1
Query: 379 LMSQW*PPSNTTDLEKKVGRWKQRNGGGWLKKKDENENQLKRTK 510
++++W T D + W +R G W K ++E++ + K+ +
Sbjct: 93 IVNEWGRSERTLDSLDEPPAWFRREMGEWKKAREEDKAEWKKAR 136
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 197 VCLGQLSSEMAYKTVSFFNRFDLIP 271
+ LGQ ++ + KTV +N FD+ P
Sbjct: 78 IVLGQYGNDPSKKTVLIYNHFDVQP 102
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 406 NTTDLEKKVGRWKQRNGGGWLKKKDENENQLKRTKAGNCE 525
NT D +KKVG +K ++ K +DE R KA N E
Sbjct: 187 NTGDSQKKVGFFKPKSNAQLTKLEDE-----ARLKAENAE 221
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 336 GGIAHSTYRSVYTVQD*SWHGTG 268
GGI H+T + +++ SWH G
Sbjct: 514 GGIVHATVSTPSSIKSLSWHRRG 536
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 265 DTCAVPALVLNRVHRPVRRVCDAPRPAR-HTLHDSDDFDLMSQW*PPSNTTDLEKKVGR- 438
D C VP +L + + PRP L+ + + + P N + + K VG
Sbjct: 81 DQCKVPGYILKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEM 140
Query: 439 WKQRN 453
W+ +
Sbjct: 141 WRNES 145
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 265 DTCAVPALVLNRVHRPVRRVCDAPRPAR-HTLHDSDDFDLMSQW*PPSNTTDLEKKVGR- 438
D C VP +L + + PRP L+ + + + P N + + K VG
Sbjct: 81 DQCKVPGYILKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEM 140
Query: 439 WKQRN 453
W+ +
Sbjct: 141 WRNES 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,446
Number of Sequences: 5004
Number of extensions: 44602
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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