Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1488
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 33 0.15
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180... 31 0.45
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 30 1.4
03_02_0091 + 5574528-5577254 30 1.4
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 30 1.4
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 29 1.8
04_04_0680 - 27217563-27220088 29 1.8
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 29 1.8
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 4.2
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 27 7.4
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 7.4
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 9.8
04_04_1351 - 32827136-32827984 27 9.8
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 413 RI*KKKSVDGNSGTEEGGSKKRMKTKIS 496
RI KK+++DG+SG E+GGS +K KI+
Sbjct: 212 RIPKKRTLDGDSGDEDGGSGYLVKFKIA 239
>04_03_0733 +
19116771-19116957,19117733-19117858,19117946-19118061,
19118395-19118483,19118692-19118743,19119361-19119829,
19120985-19121367,19121450-19122132,19122561-19123152,
19123255-19123638,19124106-19124114
Length = 1029
Score = 31.5 bits (68), Expect = 0.45
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 292 LNRVHRPVRRVCDAPRPARHTLHDSDDFDLMSQ--W*PPSNTTDL-EKKVGRWKQRNGGG 462
+N +H+ R P + L + + F + + PPS + L ++V R+ +R+G
Sbjct: 66 INVLHKEARSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHA 125
Query: 463 WLKKKDENE--NQLKRTKAGNCEVGLC 537
W +KKD +R K GN + C
Sbjct: 126 WRRKKDGRTVGEAHERLKVGNVDALSC 152
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 132 HVYSMRPYGMLQI*RLRTSAPVFALVSFQAKWL 230
HV S +PY I RLRTSAP ++ +A W+
Sbjct: 555 HVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWM 587
>03_02_0091 + 5574528-5577254
Length = 908
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 119 ILLQSCVLHAALWYVTNMKIADLRSSVCLGQLSSEMAYKTVSFFNR 256
+ L V AALW ++ A R VC G +S K V FF R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 307 RPVRRVCDAPRPARHTLHDSDDFDLMSQ---W*PPSNTTDLEKKVGRWKQRNGGGWLKKK 477
+PVR P+ H++ D DD + Q W N ++KK + K++ KKK
Sbjct: 31 KPVREKITEPKTPYHSMIDEDDVENYQQENIW----NPVVMKKKKKKKKKKKKKKKKKKK 86
Query: 478 DENENQLKRTK 510
+N+ + K+ K
Sbjct: 87 KKNKKKKKKKK 97
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 313 VRRVCDAPRPARHTLHDSDDFD--LMSQW*PPSNTTDLEKKVGRWKQRNGG--GWLKKKD 480
+RR C+A R + T+HD++ L S P S +L++++G K NG L+K
Sbjct: 389 LRRECEALRGMKKTIHDANGSGKRLSSGEDPWSQIEELKQELGHEKNLNGDLHLQLQKMQ 448
Query: 481 ENENQL 498
E+ ++L
Sbjct: 449 ESNSEL 454
>04_04_0680 - 27217563-27220088
Length = 841
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 276 RASSSPEPCTPTCTSSVRC 332
RA S PCTP SSVRC
Sbjct: 270 RAQDSSTPCTPATRSSVRC 288
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 397 PPSNTTDL-EKKVGRWKQRNGGGWLKKKDEN--ENQLKRTKAGNCEVGLC 537
PPS + L ++KV R+ +++G W KK+D + +R K+G+ +V C
Sbjct: 52 PPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHC 101
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 220 RNGLQDCQFFQQVRFDTCAVPALVLNRVHRPVRRVCDAPRPARHTLHDSDDF 375
R G+QDC F + F+T P + +H+P+ + D L +SD F
Sbjct: 525 RVGIQDC-FEGIICFETLNPPTPTCHGLHKPLSSISDELSSDLDDLDESDGF 575
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 421 EKKVGRWKQRNGGGWLKKKDEN--ENQLKRTKAGNCEVGLC 537
++KV R+ +++G W KKKD + +R K+G+ +V C
Sbjct: 64 DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHC 104
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 355 TYVLPVGGHRTLDVQVGVHGSGLELARHRYQIEPVEKTDSLVSHFA*KLTKANTGA-EVR 179
++V +GG + + V G L++ + EPVE+ SL S + K+ A +G+ E+
Sbjct: 1099 SFVHDIGGLDLVFSKFDVSGIAQSLSKDSIKTEPVERLPSLASILSDKIDMAWSGSCELH 1158
Query: 178 N 176
N
Sbjct: 1159 N 1159
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 188 GGPQSSYL*HTIGPHGV 138
GGP SSY+ T+GP GV
Sbjct: 606 GGPYSSYVVATVGPGGV 622
>04_04_1351 - 32827136-32827984
Length = 282
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 273 CRASSSPEPCTPTCTSSVRCP 335
C S +P P TPT +SS CP
Sbjct: 184 CPPSPTPTPSTPTPSSSDTCP 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,187,826
Number of Sequences: 37544
Number of extensions: 329448
Number of successful extensions: 917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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