Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1488
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L28821-1|AAA92022.1|  796|Homo sapiens alpha mannosidase II isoz...    31   3.5  
D55649-1|BAA09510.1| 1139|Homo sapiens alpha mannosidase II isoz...    31   3.5  
BC006982-1|AAH06982.1|  334|Homo sapiens arginine/serine-rich co...    30   4.6  
X16983-1|CAA34852.1| 1038|Homo sapiens integrin alpha-4 subunit ...    30   6.1  
L12002-1|AAB59613.1| 1038|Homo sapiens integrin alpha 4 subunit ...    30   6.1  
BC055419-1|AAH55419.1|  195|Homo sapiens ITGA4 protein protein.        30   6.1  
BC016671-1|AAH16671.1|  617|Homo sapiens ITGA4 protein protein.        30   6.1  

>L28821-1|AAA92022.1|  796|Homo sapiens alpha mannosidase II isozyme
           protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 400 VATIVTLDQSHLNRVTYVLPVGGHRTLDVQVGVHGSGLELARHRYQIEPVEKTDSLVSHF 221
           V+  V L    L  +   L + GHRTL   V ++  G +L+  R++  P+   DS  S F
Sbjct: 704 VSVPVRLPALGLGVLQLQLGLDGHRTLPSSVRIYLHGRQLSVSRHEAFPLRVIDSGTSDF 763

Query: 220 A 218
           A
Sbjct: 764 A 764


>D55649-1|BAA09510.1| 1139|Homo sapiens alpha mannosidase II isozyme
           protein.
          Length = 1139

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 400 VATIVTLDQSHLNRVTYVLPVGGHRTLDVQVGVHGSGLELARHRYQIEPVEKTDSLVSHF 221
           V+  V L    L  +   L + GHRTL   V ++  G +L+  R++  P+   DS  S F
Sbjct: 704 VSVPVRLPALGLGVLQLQLGLDGHRTLPSSVRIYLHGRQLSVSRHEAFPLRVIDSGTSDF 763

Query: 220 A 218
           A
Sbjct: 764 A 764


>BC006982-1|AAH06982.1|  334|Homo sapiens arginine/serine-rich
           coiled-coil 1 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 403 SNTTDLEKKVGRWKQRNGGGWLKKKDENENQLKRTKAGNCEVGL 534
           S + D E++ GR K++      K KD+  + +KR ++GN + GL
Sbjct: 131 SRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKAGL 174


>X16983-1|CAA34852.1| 1038|Homo sapiens integrin alpha-4 subunit
           preprotein protein.
          Length = 1038

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 AKWLTRLSVFSTGSI*YLCRASSSP-EPCTPTCTSSVRCPPTGKT 350
           A WL   SV + G+I Y CR   +P + C      S    P GKT
Sbjct: 80  ANWLANASVINPGAI-YRCRIGKNPGQTCEQLQLGSPNGEPCGKT 123


>L12002-1|AAB59613.1| 1038|Homo sapiens integrin alpha 4 subunit
           protein.
          Length = 1038

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 AKWLTRLSVFSTGSI*YLCRASSSP-EPCTPTCTSSVRCPPTGKT 350
           A WL   SV + G+I Y CR   +P + C      S    P GKT
Sbjct: 80  ANWLANASVINPGAI-YRCRIGKNPGQTCEQLQLGSPNGEPCGKT 123


>BC055419-1|AAH55419.1|  195|Homo sapiens ITGA4 protein protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 AKWLTRLSVFSTGSI*YLCRASSSP-EPCTPTCTSSVRCPPTGKT 350
           A WL   SV + G+I Y CR   +P + C      S    P GKT
Sbjct: 74  ANWLANASVINPGAI-YRCRIGKNPGQTCEQLQLGSPNGEPCGKT 117


>BC016671-1|AAH16671.1|  617|Homo sapiens ITGA4 protein protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 AKWLTRLSVFSTGSI*YLCRASSSP-EPCTPTCTSSVRCPPTGKT 350
           A WL   SV + G+I Y CR   +P + C      S    P GKT
Sbjct: 74  ANWLANASVINPGAI-YRCRIGKNPGQTCEQLQLGSPNGEPCGKT 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,042,746
Number of Sequences: 237096
Number of extensions: 1736946
Number of successful extensions: 4651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4651
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)