Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1487
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.6  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.9  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 340 PARHTSHDSVTLI*CHN-GSHL 402
           PA HT HDS TL   HN G+H+
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI 178


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 469 KKKDENENQVKEN*SRELRGGIMYYK--LPLHQAVTACSTIVGEQVAAGEPTCLALPGTP 642
           K KD  E+ +  N  R +   + + +  LP+ +  TA S  +  +VA G   CL +    
Sbjct: 518 KTKDIRESHILNN--RRILKSLQFIETELPMIRKPTAMSAFIDREVAYGSIDCLPMDKGD 575

Query: 643 YAHPVKL 663
           +   +KL
Sbjct: 576 FEPIMKL 582


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 587 TIVLQAVTA*CSGSL*YIIP 528
           T+V+++ T  C+GSL YI+P
Sbjct: 138 TVVIESSTFWCTGSLIYILP 157


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 424 KKSADGNSGAEEGGSKKKDENENQVKEN*SRELRGGIMYYKLPLHQAVTACSTIVGE 594
           KK+ DGN       S+  D +EN V  N S  L   ++    PL    +A  + +GE
Sbjct: 478 KKNPDGNLVET---SELSDSDENSVLSNKSSTLSKKVVENTSPLKYTHSASKSFIGE 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,844
Number of Sequences: 5004
Number of extensions: 52623
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)