Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1487
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           31   0.87 
04_04_0505 + 25719959-25720052,25721548-25722266                       31   0.87 
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509...    30   2.0  
04_04_0881 + 29055724-29059197                                         29   3.5  
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377...    29   4.7  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   8.1  
03_02_0091 + 5574528-5577254                                           28   8.1  

>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 550 PLHQAVTACSTIVGEQVAAGEPTCLALPGTPYAHPVKLASRQG 678
           PLH+AV    + V  ++   EP C   P      P+ +A+R+G
Sbjct: 118 PLHEAVKQRRSAVALRLLEAEPNCGHTPNVDMQTPLHIAAREG 160


>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 25/76 (32%), Positives = 31/76 (40%)
 Frame = +1

Query: 187 PLQCLPRSAFKRNGLQDCQFFQQVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHDS 366
           P Q  PR     +G +     +  R A  A P     R+    RR  D PRPAR   H +
Sbjct: 51  PNQRAPRRLIGDHGRKPLTLHEGRREAF-ATPPKSYGRLLGRRRRHRDLPRPARGVDHPA 109

Query: 367 VTLI*CHNGSHLATLR 414
           VTL   H  S    +R
Sbjct: 110 VTLRGLHPSSETGDIR 125


>07_01_0677 +
           5087584-5087589,5088890-5089172,5093561-5093704,
           5094167-5095269
          Length = 511

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 550 PLHQAVTACSTIVGEQVAAGEPTCLALPGTPYAHPVKLASRQG 678
           PLH+AV    + V  ++   EP C   P      P+ +A+R+G
Sbjct: 16  PLHEAVKQRRSAVALRLLEVEPNCGHTPNVDMQTPLHIAAREG 58


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 382  CHN-GSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQVKEN*SRELRGGIMYYKLP 552
            C+N G+ LA LR     S+DG    EEG  +K+ E+  +VK      LRG   YY  P
Sbjct: 867  CYNDGTVLAILRL-PSTSSDGAVVIEEGSFRKEAESLGKVKHRNLTVLRG---YYAGP 920


>03_05_1019 +
           29736644-29736709,29737156-29737515,29737595-29737735,
           29737912-29738044,29738344-29738457,29738553-29738701,
           29740815-29740907,29741019-29741079,29741180-29741512,
           29742149-29742224,29742322-29742421,29743300-29743369,
           29743987-29744082,29744355-29744402,29744427-29744658,
           29745186-29745246,29745265-29745375
          Length = 747

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 556 HQAVTACSTIVGEQVAAGEPTCLALPGTPYAHP 654
           H     C T VG+ V  GEP   ++PGTP   P
Sbjct: 128 HSPDRDCKT-VGDIVKLGEPPVPSIPGTPVCDP 159


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 104 PPFACILLQSCVLHAAL 154
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 119 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNR 256
           + L   V  AALW   ++  A  R  VC G +S     K   FF R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,586,413
Number of Sequences: 37544
Number of extensions: 409175
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)