Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1487
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    28   5.5  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   5.5  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     28   5.5  
Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical p...    27   9.7  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical
           protein M88.3 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +1

Query: 289 VLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*KKKSADGNSGAEEGGS 468
           V++ V  PV  +CD P      S+   T+  C  G +L T  +   K++DG +G      
Sbjct: 103 VVHDVPPPVTAICDGPCKKAFPSNLLNTIGRC--GHYLCTACYGILKNSDGTTGCSSRMC 160

Query: 469 KKKDENENQVKEN*SREL 522
             K ++  + K+N  +E+
Sbjct: 161 YWKGKDRKEAKKNFEKEV 178


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 689 GQPGPWREANLTGCA*GVPGNARQVGSPAATCSPTIVLQAV 567
           G PGP   +   G   G+PGNA + G P  T + T  L  V
Sbjct: 107 GPPGPRGSSGTPGKP-GLPGNAGKPGMPGTTPNQTCPLNQV 146


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 689 GQPGPWREANLTGCA*GVPGNARQVGSPAATCSPTIVLQAV 567
           G PGP   +   G   G+PGNA + G P  T + T  L  V
Sbjct: 144 GPPGPRGSSGTPGKP-GLPGNAGKPGMPGTTPNQTCPLNQV 183


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 689 GQPGPWREANLTGCA*GVPGNARQVGSPAATCSPTIVLQAV 567
           G PGP   +   G   G+PGNA + G P  T + T  L  V
Sbjct: 128 GPPGPRGSSGTPGKP-GLPGNAGKPGMPGTTPNQTCPLNQV 167


>Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -1

Query: 330 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 163
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -1

Query: 330 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 163
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 475 FFWSHPPPLRCFHRPTFFSK-TVVLRGGYHCDIRSKSLNRVTYVL 344
           F W +     C HR  FFSK T V+      ++RS+S   +  +L
Sbjct: 282 FMWHNAQINDCHHRSKFFSKWTAVIDIDERIEMRSESFKTIISLL 326


>AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical
           protein T10B11.4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 304 HRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*KKKSADGNSGAEEGGSKKKDE 483
           + PV   CD P      S+   T+  C +  +L T  F   K++DG +G        K  
Sbjct: 119 YSPVSSKCDGPCQKEFPSNLLNTIGRCDH--YLCTACFGLVKNSDGTNGCSSRQCFSKGS 176

Query: 484 NENQVKEN 507
              ++K+N
Sbjct: 177 TSKEIKKN 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,568
Number of Sequences: 27780
Number of extensions: 333061
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)