Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1485
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 30 0.37
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 29 0.85
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.5
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 2.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 3.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 4.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 7.9
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 29.9 bits (64), Expect = 0.37
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 68 IATMDLFIINRYNDTNDDTHIIEQEAKRL--EQLKQRIEE-RXKAFSVKKSSDVITLKEE 238
++++++ + ++D E+E K+ E+LKQ IE R KA K+ ++ L+E+
Sbjct: 12 LSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEK 71
Query: 239 KQTEIYLTXPFLLMMICQRKYQNQIHLQNQKK 334
K L RK Q+Q L++ +K
Sbjct: 72 KTNYKILQKSNDETAQAMRKMQDQARLRDLQK 103
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 107 DTNDDTHIIEQEAKRLEQLKQRIEERXKAFSVKKSSDVITLKEEKQ 244
+ NDD H+ ++ KRL++ K++ R K + K +D EK+
Sbjct: 100 EENDDLHLDKETKKRLKKEKKKAARREKEEARKAKADTTQGVGEKE 145
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/94 (20%), Positives = 45/94 (47%)
Frame = +2
Query: 98 RYNDTNDDTHIIEQEAKRLEQLKQRIEERXKAFSVKKSSDVITLKEEKQTEIYLTXPFLL 277
RYN + + + E R + + + ++++ + + E EI + P ++
Sbjct: 214 RYNSLQEASRK-QSERDRRQYQETFKNQSIASWTIIDQEETSSDDESLSKEIVNSNP-IM 271
Query: 278 MMICQRKYQNQIHLQNQKKKFMLKNTKNLKFLDQ 379
M+C + +++Q L+N + K+ KNL+ ++Q
Sbjct: 272 CMVCNKNFRSQNQLENHENS--KKHKKNLRKMNQ 303
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 629 CILAPXXSGKTLSFVIP 679
C+ A SGKTLS+VIP
Sbjct: 177 CVSAATGSGKTLSYVIP 193
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 92 INRYNDTNDDTHIIEQEAKRLEQLKQRIEERXKAFSVKKSS 214
+++ N + ++ +E+LKQ EER K F V K +
Sbjct: 1036 VDQMNSLLREAFVLLHSNNIMERLKQEFEERYKGFLVSKKA 1076
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 373 GSSDFQKKSKVQRILPYWLSHPTVVS 450
GS DFQ ++ ++L L HPT+ S
Sbjct: 161 GSPDFQLNTQANKLLSILLWHPTISS 186
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 119 DTHIIEQEAKRLEQLKQRIEERXKAFSVKKSSDVITLKEEK 241
D ++E KR+EQL++ IEE + + + + K+ K
Sbjct: 26 DEQAHKEEMKRVEQLRREIEEERQLLELHRLQEAAGGKKRK 66
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +2
Query: 143 AKRLEQLKQRIEERXKAFSVKKSSDVITLKEEKQTEIYLTXPFLLMMICQRKYQNQIHLQ 322
+K++ QR + K +K + ++ +EEK ++ L+ ++C+RK+Q+ H+
Sbjct: 363 SKKVATSLQRWNDAQK--ELKDNIPDLSEEEEKLLLHFVWKSALICVLCERKFQSWGHVV 420
Query: 323 NQKKKFMLKNTKNLKFLDQVTFKKNL--RCREYYHTGYR 433
+ ++ N NLK + V+ + L R R+ YR
Sbjct: 421 KHITQSIMHN-NNLKNHELVSSAELLMHRVRQTESVDYR 458
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 41 LRSFSL*FQIATMDLFIINRYNDTNDDTHIIEQEAKRLEQLKQRI---EERXKAFSVKKS 211
LR S F + I++ ++ + +T I+ R+ +L++ + +++ K +
Sbjct: 504 LRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIM 563
Query: 212 SDVITLKEEKQTEIYLTXPFLLMMICQRKYQNQIHLQNQKKKFMLKN 352
S + + + + ++ + P ++ I R+Y IH K L++
Sbjct: 564 SATLRVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQD 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,951
Number of Sequences: 5004
Number of extensions: 32721
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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