Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1480
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 51 5e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 51 5e-08
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 31 0.057
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.30
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 28 0.40
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 2.1
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 2.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 4.9
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 4.9
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 6.5
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 24 6.5
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 24 8.6
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 8.6
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 24 8.6
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 51.2 bits (117), Expect = 5e-08
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLKVRGSLARRALIDLGKK 268
V+DK + +FDK +++ KEVP +K I+ + + +R+K+ GSLAR A+ DL ++
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66
Score = 29.9 bits (64), Expect = 0.13
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRA 321
L E+G+I++V QH Q IYTRA
Sbjct: 63 LAERGVIQKVDQHSKQAIYTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 51.2 bits (117), Expect = 5e-08
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLKVRGSLARRALIDLGKK 268
V+DK + +FDK +++ KEVP +K I+ + + +R+K+ GSLAR A+ DL ++
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66
Score = 28.3 bits (60), Expect = 0.40
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTR 318
L E+G+I++V QH Q IYTR
Sbjct: 63 LAERGVIQKVDQHSKQAIYTR 83
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 31.1 bits (67), Expect = 0.057
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 255 SMSALLAREPRTFNLSDTXAGVISLYCGTSLNSFSYVGLSNNTWLFNLSRTFPLDHFFFL 76
S+SA FNL+ GV ++ G S N F+ + + + W F + P+D FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASPN-FASICVFDALWSFGVGGNLPVDSAIFL 197
Query: 75 -ALP 67
ALP
Sbjct: 198 EALP 201
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.30
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 152 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 39
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 28.3 bits (60), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 174 GTSLNSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 61
G + SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1003 GKADKSFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 39 HRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 131
HR DP+ P RR GP + V + +C
Sbjct: 205 HRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 2.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 228 PRTFNLSDTXAGVISLYCGTSLNSFSYVGLSNNTWLFNLSRTFPLD 91
P FN ++ + ++S T N+FSY+ L + ++L+ + P D
Sbjct: 116 PLLFNENNVDSALLSRLSTTGNNTFSYL-LQSWSFLYQYKKRLPKD 160
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 324 GRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLS 208
G TR+D L + +Y+ E PK L ++ + + +S
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVS 177
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 180 YCGTSLNSFSYVGLSNNTWLFNLSRTFPLD 91
Y G+ + SY L N TW ++L T+P +
Sbjct: 984 YDGSMPSKMSY-NLENRTWSYDLISTWPAE 1012
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 138 SNNTWLFNLSRTFPLDHFFFLAL 70
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 192 VISLYCGTSLNSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 61
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 174 GTSLNSFSYVGLSNNTWLFNLSRTFPLDHFFFLA 73
G +LN+FS + + W FN +P F A
Sbjct: 168 GIALNNFSTINDFSKLWAFNHPLMYPKSAIVFNA 201
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 80 SWLCRHRILPSSSVFXEAVW 21
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 333 IALGRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLSDTXAGVISLY 178
I LG+ + +VLD FD+ K +++L + R + + T + L+
Sbjct: 85 IRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELF 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,323
Number of Sequences: 5004
Number of extensions: 30141
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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