Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1480
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 74 4e-14
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 74 4e-14
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 58 3e-09
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.28
10_01_0146 - 1719997-1720386,1721498-1721515 29 1.1
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 28 2.6
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 3.5
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 27 3.5
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 4.6
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 6.1
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 6.1
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 27 6.1
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 73.7 bits (173), Expect = 4e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLKVRGSLARRALIDL 259
++K+NN VLFD+ TY+KL EVP+YK ITP+ +SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L ++GLI+ V H Q IYTRAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 73.7 bits (173), Expect = 4e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLKVRGSLARRALIDL 259
++K+NN VLFD+ TY+KL EVP+YK ITP+ +SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ + L +GLI+ V H Q IYTRAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLK 220
++K+NN VLFDK TY+KL EVP+YK ITP+ +SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 7 REGXGQTASXNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 132
R G G + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 3 RTRRLXPNSLXKHRRRRKDPVAAKPRRRS 89
R + P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 219 FNLSDTXAGVISLYCGTSLNSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 76
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 219 FNLSDTXAGVISLYCGTSLNSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 76
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 27.5 bits (58), Expect = 3.5
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPTYEKLFKEVPQYKLITPAXVSERLKVRGSLARRALIDLGKKVS 274
V+D + L DKP YE L P + L+ S+ + VR + A L DL K VS
Sbjct: 187 VKDSVKEDKLRDKPGYEHL--NDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVS 241
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RRLXPNSLXKHRRRRKDPVAAKPRRRSGP 95
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 247 THRLREKGLIKQVVQHHG 300
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 170 VPQYKLITPAXVSERLKVRGSLARRALIDLGKKVSSN 280
+P Y L A V +K+RG L GKK+S N
Sbjct: 1840 IPHYYLTVDARVDNLIKLRGELNPLQESSGGKKISIN 1876
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 294 VLDYLFD----ETFFPKSMSALLAREPRTFNLSDTXAGVISL 181
V+D+L D TFFP+ +S + T+ SD GVI L
Sbjct: 281 VVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQL 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,620
Number of Sequences: 37544
Number of extensions: 209886
Number of successful extensions: 611
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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