Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1479
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.63 
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    29   0.63 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   0.83 
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.9  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   5.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   5.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.7  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 399 SATGVCPSCNGLGTRLTAIPPAPFEETRADFGEGAPPPDPP 277
           S    C +C G G RL  IPP+   +T  D   G     PP
Sbjct: 252 SHKSTCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPP 292


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 400 KLVLHTSQSGEIQFMWTINNFSFCREEMGEVLKSSTSQ-LVLVIN*KGCLRVNPKG 564
           KLV H+ Q+ E +    +NN S C   + E LK   SQ +VL+ N K  L ++ KG
Sbjct: 279 KLVKHSWQNTEAENHCELNNDSSC---LREALKKFASQSIVLLKNKKKLLPLSRKG 331


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 168  VTFWKIGLYERIMALARYNQQTARS 242
            +TFWK+ LY+  + L RY  + +R+
Sbjct: 978  LTFWKLSLYDVFVPLERYEFERSRA 1002


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 423 LTCVKHQFSATGVCPSCNGLGTRLTAI 343
           L+CV  +F  TGV P  + +G RLT I
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLTKI 213


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 349 GEPRAQPVARRTHARRRKLVLHTSQSGE-IQFMWTINNFSFCR 474
           G+P A  VARR     R+L+++TS++GE I+  + + N  F R
Sbjct: 160 GQPIAFKVARRIF---RRLLVYTSEAGENIEICFFLTNSLFKR 199


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 220 YLAKAII-RSYNPIFQNVTTFKHSYDHESLI 131
           YLA+ ++  +Y  IFQ +T  +   DH  L+
Sbjct: 663 YLAEGVVLNNYANIFQLITRMRQMADHPDLV 693


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 394 RRKLVLHTSQSG-EIQFMWTINNFSFCREEMGEVLKSSTSQL 516
           R  ++ H    G     M+T N  + C E MG  L  S+S L
Sbjct: 218 RHDIIRHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYL 259


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 339 PAPFEETRADFGEGAPPPDPPTHSLPEPTSTKRSARFADYTWLRPLFVR 193
           P  F+E + D+ +  P PD P+ +         S++  + + ++P  V+
Sbjct: 76  PPEFDENKVDWKQEKPKPDAPSFADNNSFDNVNSSKLTNPSPVQPNIVK 124


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 345 IPPAPFEETRADFGEGAPPPDPPTHSLPEPTSTKR 241
           IPP  +   +AD     PPP PPT   P+ T+T +
Sbjct: 223 IPPT-YTPKQADPLPAPPPPPPPTLP-PQSTNTSQ 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,078
Number of Sequences: 5004
Number of extensions: 38755
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)