Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1479
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 297 APPPDPPTHSLPE 259
           APPP PP+ S P+
Sbjct: 342 APPPPPPSSSGPD 354


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 342 PPAPFEETRADFGEGAPPPDPPTHSLPEPTS 250
           PP P +        GAPP   P+  +  P S
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 300 GAPPPDPPTHSLPE 259
           GAP P P  H  P+
Sbjct: 19  GAPGPQPSPHQSPQ 32


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +2

Query: 176 LENWIIRTNNGLSQV 220
           ++NW++  N+GL+++
Sbjct: 543 IDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +2

Query: 176 LENWIIRTNNGLSQV 220
           ++NW++  N+GL+++
Sbjct: 543 IDNWMLDLNSGLNKI 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,235
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)