Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1477
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.48 
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    28   1.5  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    26   4.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.0  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 249 IAAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 389
           + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 178 VFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 213 SRRRNVGCRRQVIAAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 359
           + R     R++ +A+ K V  +          ++ TQH +  LKDV HS
Sbjct: 122 ANRMVANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 339 LKDVSHSALRDLLQFMYQGEVNVKQEELASFIKYS 443
           LKDV+    +++   +Y+G+   K  +L+S ++YS
Sbjct: 135 LKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYS 169


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 207 WRSRRRNVGCRRQVIAAHKLVLSVCSPYFQEMFKMNP 317
           W+    N+   R++ +  K++  +C  YF  +   NP
Sbjct: 54  WKKLESNISFSRKLFSIGKVLDYICKVYFDSLKLQNP 90


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 451 VVPLYLINDANSSCLTLTSP 392
           V+PLY I+ +N S LTL  P
Sbjct: 235 VLPLYTISHSNLSTLTLVKP 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,701
Number of Sequences: 5004
Number of extensions: 59201
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)