Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1475
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 34 0.12
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 31 0.88
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 30 1.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 2.7
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 29 3.5
03_01_0245 + 1916718-1917443,1917534-1917719 29 3.5
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 29 4.7
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 29 4.7
09_06_0144 + 21149338-21150651 28 8.2
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 8.2
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 28 8.2
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 443 GREHHQGFPGN---AGSTAGDRPGEYRRGHHGNVLQ 541
G+EHH GF G G G PG +RGHH + ++
Sbjct: 199 GQEHHGGFDGQRRGGGRRDGHGPGHQQRGHHPSYIR 234
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 469 WQRRLYSRRSSRGIPTRSSRKRS--STMPKLVTGQXLQVPWILMSSIAMMP*VGSPSPMK 642
W+ L +RRSS +P R +R+RS ++ + W+ +++A P +PSP+
Sbjct: 167 WEAELAARRSSGALP-RPARRRSLADSLACAWPFSWITCRWLKGNAVAAEPAAATPSPLP 225
Query: 643 CRSVTTI 663
+ T+
Sbjct: 226 SPATDTV 232
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 289 PASSNASTIPLPGSCGCAKVSGTRRARGTHAPTSPRTP 176
PA++ AS PLP + A S RRA + AP P P
Sbjct: 17 PAAAAASPQPLPRAFLAAAASSPRRAAASPAPAPPPPP 54
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 322 GGYGVTQVTS*PASSNASTIPLPGSCGCAKVSGTRRARGTHAPTSPRTP 176
GGY T + P+ S+ S+ PG C GT A + TSP TP
Sbjct: 277 GGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPA--PSSGTSPTTP 323
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 264 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 431
++ A+ AG VTWVT K GLK ++ + D+HEQ S+ G
Sbjct: 371 LIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSFDRILAEVRAFFDVHEQEGSHPGGVH 430
Query: 432 VKALAENIT 458
++ +N+T
Sbjct: 431 LEMTGQNVT 439
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 334 ASSLGGYGVTQVTS*PASSNASTIPLPGSCGCAKVSGTRRARG-THAPTSPRTPR 173
+S++GG G P + ++ PL CG G RG + TS RTPR
Sbjct: 41 SSAVGGGGGCVPCLAPHADHSVRAPLTSCCGSGGGGGDNNLRGRSSTTTSARTPR 95
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 445 PRTSPGFPWQRRLYSRRSSRGIPTR--SSRKRSSTMPKLVTGQXLQVPWILMSSIAMMP* 618
P +P PW+ + + I + S+ K+S +P L Q W+ ++++ +
Sbjct: 39 PENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAK 98
Query: 619 VGSPSPMKCRSVTTIPLLFN 678
+ +P++ V T +FN
Sbjct: 99 IVEVAPIRVYEVATFYTMFN 118
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 264 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 431
++ A+ AG VTW+T K GLK + ++ + D+H+Q S+ G
Sbjct: 424 LIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGVH 483
Query: 432 VKALAENIT 458
++ +N+T
Sbjct: 484 LEMTGQNVT 492
>09_06_0144 + 21149338-21150651
Length = 437
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 606 NDALSWKPIAXEVPVG----HHHTAAVQQRPNPH 695
N ++W +P+G HHH A + RP+PH
Sbjct: 161 NFLVAWGRATRGLPMGAPPVHHHAALFKPRPSPH 194
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +2
Query: 404 EKLEYWCIFRE-GFGREHHQGFP 469
+K ++WC+F+E FG E+++G P
Sbjct: 424 KKDDFWCLFKECVFGHENYKGEP 446
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 290 SRGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGGHA 397
S G + S S T RS DSR +RY NGG++
Sbjct: 880 SNGSVDRSSSHNETRSRSADSRGKRYENGDVNGGNS 915
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,761
Number of Sequences: 37544
Number of extensions: 447647
Number of successful extensions: 1419
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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