Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1475
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U42841-9|AAM97955.1|  375|Caenorhabditis elegans Gex interacting...    29   3.2  
U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting...    29   3.2  
U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    29   3.2  
U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting...    29   3.2  
U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting...    29   3.2  
U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting...    29   3.2  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   3.2  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z82092-3|CAB05013.1|  638|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL021471-3|CAA16297.1|  638|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81109-6|CAB03253.2|  179|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   9.8  
AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.5 protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +3

Query: 168 FLLGVRGDVGACVPRALRVPDT-FAQPQLPGKGIVDALLEAGHEVTWVTPYP---PSELA 335
           FLL       +C    + VP   F+  Q  GK + D L+EAGH+VT++ P     P    
Sbjct: 6   FLLLFVLPAASCYKILVSVPKFGFSHMQTMGK-LADILVEAGHDVTFLMPVDVPIPQNGT 64

Query: 336 KGLKIVDVSATVSISK 383
           +  K+V V  T +I++
Sbjct: 65  ELAKVVLVPTTDAINE 80


>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 232 VSGTRRARGTHAPTSPRTPRR 170
           V GTRR    HAPT+P TP +
Sbjct: 858 VEGTRRGSVEHAPTTPTTPTK 878


>AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical
           protein T25D3.3 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 294 EVTWVTPYPPSELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKAL 443
           ++   T   P+ + + LKI D+++T ++    D+     ++TGV+F+ AL
Sbjct: 300 QIAETTSLDPAVIDRVLKIPDLASTAAMKVARDVGINGGTSTGVNFLAAL 349


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = +2

Query: 293 RGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGGHA*AEKLEYWCIFREGFGREHHQGFPG 472
           RG      S   +G+   D R Q+ S    +GG+  +   +       GFG   ++GF  
Sbjct: 241 RGQNSGGYSGNNSGEYRNDYRSQQDSRDHRSGGNNSSSGFKN----DGGFGGNDNRGFGN 296

Query: 473 NAGSTAGDRPGEYRRGHHGNV 535
           N G + G+ P    RG+  N+
Sbjct: 297 NGGGSFGN-PNNSYRGNSNNI 316


>U42841-9|AAM97955.1|  375|Caenorhabditis elegans Gex interacting
           protein protein16, isoform g protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 111 HHSGWEGHTGGYQGHRSSSLSRGGHG 136


>U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting
           protein protein16, isoform k protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 393 HHSGWEGHTGGYQGHRSSSLSRGGHG 418


>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 442 HHSGWEGHTGGYQGHRSSSLSRGGHG 467


>U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting
           protein protein16, isoform a protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 399 HHSGWEGHTGGYQGHRSSSLSRGGHG 424


>U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting
           protein protein16, isoform b protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 339 HHSGWEGHTGGYQGHRSSSLSRGGHG 364


>U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting
           protein protein16, isoform j protein.
          Length = 716

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 452 HHQGFPGNAGSTAGDRPGEYRRGHHG 529
           HH G+ G+ G   G R     RG HG
Sbjct: 452 HHSGWEGHTGGYQGHRSSSLSRGGHG 477


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
 Frame = -2

Query: 625 FQLKASLRCWTSRSRALEVXAP*PASASLKNVSVMT-ASVFPWTI--ACCRAGVARETLV 455
           FQ++A + C+ ++ +++ +         +   S+++ ASV P+ I  A CRAG++RE  +
Sbjct: 102 FQIEALVYCFYTKHQSISIFMNCRRWPKIFCYSMISVASVIPFFIFYALCRAGMSREEQL 161

Query: 454 MFSAKAF 434
           ++  +++
Sbjct: 162 VYVGRSY 168


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 431 REGFGREHHQGFPGNAGSTAGDRPGE-YRRGHHGNVLQRCRSWLRGXY 571
           R G  R    G PG      GDR G+  RRG  G V +R R   R  +
Sbjct: 601 RRGVDRPPGSGMPGIDRPPGGDRMGDKQRRGARGGVKERERKRRRDEF 648


>Z82092-3|CAB05013.1|  638|Caenorhabditis elegans Hypothetical
           protein ZK384.3 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 462 VSLATPALQQAIVQGNTDAVITETFFNDAEAGYGAXTSSAL---DLDVQHRNDALSWKPI 632
           V   TP +Q  + Q   DA I   FF+  +  Y   ++  +    LD ++ N  +S+ P+
Sbjct: 183 VDQVTPPMQNLVSQNQLDAPIFTIFFDKRDPDYYYPSNGLITYGGLDTKNCNANISYVPV 242

Query: 633 A 635
           +
Sbjct: 243 S 243


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 366 TVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATPALQQAIVQGNTDAVITETF 536
           T  ++ TVD H Q NS     FV     +I  V    P L+  +    +D+ IT TF
Sbjct: 690 TAKMNATVDAHSQMNSFL-KKFVDHSITDIEYVVRDRPVLESVLDMEMSDSSITGTF 745


>AL021471-3|CAA16297.1|  638|Caenorhabditis elegans Hypothetical
           protein ZK384.3 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 462 VSLATPALQQAIVQGNTDAVITETFFNDAEAGYGAXTSSAL---DLDVQHRNDALSWKPI 632
           V   TP +Q  + Q   DA I   FF+  +  Y   ++  +    LD ++ N  +S+ P+
Sbjct: 183 VDQVTPPMQNLVSQNQLDAPIFTIFFDKRDPDYYYPSNGLITYGGLDTKNCNANISYVPV 242

Query: 633 A 635
           +
Sbjct: 243 S 243


>Z81109-6|CAB03253.2|  179|Caenorhabditis elegans Hypothetical
           protein R10D12.12 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +3

Query: 435 KALAENITRVSLATPALQQAIVQGNTDAVITETFFNDAEAGYGAXTSSALDLDVQHRNDA 614
           +A  EN+ ++ +    LQ  I +GN +  + +  F +     G+     LD+D      +
Sbjct: 22  EASLENLKKIGVKKIRLQ--IGKGNFNQDVIDRVFGETSGDEGSVKCDGLDIDYYRYKPS 79

Query: 615 LSWKPIAXEVPVGH 656
           LS       + +GH
Sbjct: 80  LSEDMAEALIVIGH 93


>Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical
           protein T05E11.8 protein.
          Length = 202

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 404 EKLEYWCIFREGFGREHHQGFPGNAGSTAGDRPGEYRRGHHG 529
           + +E+      GFG  H     G  G   G + G+ +RG HG
Sbjct: 148 DTIEFIAKRSRGFGGRHGGRKGGKGGKHFGKKNGDKKRGPHG 189


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +2

Query: 158 SDCFSSWCAW*RRRVRTTCSACSRYLRAATTPWQRDSRRVA*GWSRGDLGDSVSSER--- 328
           S+C SS       R   TC+AC   L  +    +   +  A G     +G  VSSER   
Sbjct: 6   SNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFVSSERAAA 65

Query: 329 ---TGQRSEDSRRQRYS 370
               G  S++SR   Y+
Sbjct: 66  NNFNGMGSQESREMTYA 82


>AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical
           protein F10D2.8 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 IVDALLEAGHEVTWVTP 314
           I DAL +AGH VT+ TP
Sbjct: 37  IADALTDAGHNVTFFTP 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,540
Number of Sequences: 27780
Number of extensions: 353834
Number of successful extensions: 1146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)