Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1475
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.52 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
 Frame = +2

Query: 212 CSACSRYLRAATTPWQRDSRRVA*GWSRGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGG 391
           C+   +YLR    P      ++   W  G  GD +SSE     ++ S  ++  I K + G
Sbjct: 168 CTGYQQYLRLLEVP------QINLEWGEGSSGDDLSSEWDSDYTDKSNEKK--IPK-SSG 218

Query: 392 HA*AEKLEYWCIFREGFGREHHQ--GFPGNAGS-TAGDRPG 505
                 + +W  F + + ++ +      G+ G+  AG  PG
Sbjct: 219 WRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFRAGPTPG 259


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 467 PGNAGSTAGDRPGEYRRGHHGNVL 538
           PGN   +  + PG +  G H N+L
Sbjct: 60  PGNFSPSGPNSPGSFTAGCHSNLL 83


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 467 PGNAGSTAGDRPGEYRRGHHGNVL 538
           PGN   +  + PG +  G H N+L
Sbjct: 60  PGNFSPSGPNSPGSFTAGCHSNLL 83


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 293 VTSLKQRVDYPFARELWLRE 234
           V S  QR +YP  R L++RE
Sbjct: 122 VFSTLQRAEYPTNRSLFIRE 141


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 231 TFAQPQLPGKGIVDALLEAGH 293
           T A PQLP +  VDAL    H
Sbjct: 451 TAAPPQLPTEESVDALCNTLH 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,469
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)