Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1473
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419...    29   2.7  
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    29   3.5  
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171...    29   3.5  
06_02_0037 - 10856616-10856915,10857527-10860238                       29   3.5  
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    28   6.2  

>02_03_0381 -
           18339290-18339994,18340083-18340103,18341925-18341982,
           18342084-18342220,18342480-18342650
          Length = 363

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 PEEWAPWSFVVPAKNPHAPPP 319
           P  W+P S V P  NPH+ PP
Sbjct: 199 PPPWSPHSGVPPPWNPHSAPP 219


>12_01_0220 -
           1657554-1657620,1657943-1658109,1658110-1658267,
           1658362-1658447,1658559-1658808,1659194-1660320,
           1662207-1662351,1663555-1663696,1663775-1663828,
           1663914-1663985,1664710-1664778,1664885-1664926,
           1665024-1665092,1665257-1665394,1665518-1665628,
           1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 299 NPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 394
           +P  PPP+S    GP +D  Q+     LL +P
Sbjct: 55  SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86


>11_01_0219 -
           1710206-1710246,1710479-1710620,1710699-1710752,
           1710838-1710909,1711631-1711699,1711807-1711848,
           1711946-1712014,1712130-1712267,1712390-1712500,
           1712576-1712726,1713720-1713775,1714076-1714753
          Length = 540

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 299 NPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 394
           +P  PPP+S    GP +D  Q+     LL +P
Sbjct: 55  SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 126 RMHRSHASKNQINNMRPMILEDRTXFTSLTNDDSEQQQKPVEEHRRSGHRGASWCL 293
           R H S A  N +NN R MIL   T   ++T     +    V      GH G    L
Sbjct: 416 RQHSSEAHANPLNNGRSMILLLATLTATVTYQAGLEPPGGVWRDNEGGHNGGDLIL 471


>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 304 RILRRHHEAPRCPLLRCSSTGFCCCS---ESSLVKEVK 200
           R LR H E P    ++CS  G C CS   +S+L K +K
Sbjct: 230 RHLRAHEEVPSTERIKCSFEG-CECSFSNKSNLTKHIK 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,123
Number of Sequences: 37544
Number of extensions: 350348
Number of successful extensions: 971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)