Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1471
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.47 
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   4.4  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    26   4.4  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   5.8  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   5.8  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 72  WPKLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRT 236
           WPKL+KN+  IT  +   T   S  F P       ++ H +LDLR   +   VR+
Sbjct: 746 WPKLRKNIRKITKPNGFTTDQHSQTFIP-------SQTHTKLDLRLSDVTDSVRS 793


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 39  YYNRQQIVPLEWPKLKKNLINITFQH---YLPTS---NPSAQFPP-RTFAC 170
           Y N + ++ + WP+L++ +I  T Q+   + P+S   N  + FP  R + C
Sbjct: 77  YINSKGLIRINWPQLQQQVIGPTEQYTGFHFPSSGRFNTQSTFPTIRNWIC 127


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 291 GTRFDTIPD--KRKLETDLLVFEPPSLAPEYEGQDDND 184
           G R+    D  KRKLET+ L         E EG+DD D
Sbjct: 160 GVRYGFSDDIMKRKLETEKLEANNKEEKEEKEGKDDKD 197


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 281 SIPSLTNESWKQTFWCSNHHL*PQSTKVK 195
           SI  L + S   T  C N  + PQSTKVK
Sbjct: 184 SIIKLPDRSSSFTLQCINESVRPQSTKVK 212


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/51 (27%), Positives = 18/51 (35%)
 Frame = +3

Query: 102 ITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGLFP 254
           +    Y P +N     PP   +     N     LRT  L M + TP    P
Sbjct: 441 LRLDEYPPDANRGYNLPPAIISVFDENNTKLCSLRTAALLMFIPTPDFSMP 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,614
Number of Sequences: 5004
Number of extensions: 45693
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)