Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1468
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    28   0.047
12_02_0230 + 15973390-15974645,16002878-16003097                       31   1.2  
01_03_0308 - 14883728-14884120                                         29   4.7  
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412...    28   8.2  
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167...    28   8.2  
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551...    28   8.2  

>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 28.3 bits (60), Expect(2) = 0.047
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +2

Query: 83  PGQPARGEAHLAAAVICPSDEXSKTFTINCASGDMLKLRATDXRARQEWVDGLXAIAGYT 262
           P +P  GE HL  + +  S    + F+I   +   L LRA     R  WV+ L A     
Sbjct: 166 PRKPI-GEIHLKVSSVRESRSDDRRFSIFSGT-KRLHLRAETREDRAAWVEALQATKEMF 223

Query: 263 PR 268
           PR
Sbjct: 224 PR 225



 Score = 25.8 bits (54), Expect(2) = 0.047
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WFAVXPETGVLSYYLYDGPGDTIQPGQPARG 103
           WFA+    GVLSYY   GP   +   +  RG
Sbjct: 107 WFAL--HDGVLSYYKIHGPDRIVLSRETERG 135


>12_02_0230 + 15973390-15974645,16002878-16003097
          Length = 491

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 79  TAWTAGQGGGSFSCSSDMPKRRXLQDLHHKLRVRRHVEA 195
           TA+T   G G  SC S+ P++  L  L H  R RR  EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 322 AMASARQQLQATELSDAALARCIESSDSPFPHTDPDLVLLKATSAA 459
           AMA++R    AT L   +      +S SPFP T P ++  + T  A
Sbjct: 22  AMAASRTDTGATALPSPSPIENSTASRSPFPTTSPSMIDEQTTERA 67


>07_03_1644 -
           28338535-28339103,28339512-28340326,28341104-28341205,
           28342469-28342594,28342782-28343071
          Length = 633

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 415 HTDPDLVLLKATSAASMQCLLQCLGVLHRQQQYR 516
           +T PD V+L   S  SM C L C G++ RQ   R
Sbjct: 225 YTSPDEVILCPDSQQSMYCQLLC-GLVERQHVLR 257


>05_05_0060 -
           22015440-22015481,22015572-22015709,22016704-22016799,
           22016911-22017135
          Length = 166

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  AGQGGGSFSCSSDMPKRRXLQDLHHK 168
           AG+GG      +D+P+ R L+DL  K
Sbjct: 48  AGEGGAEADADADLPELRRLRDLEAK 73


>02_01_0740 -
           5511434-5511547,5511952-5512023,5512106-5512300,
           5512408-5512611,5512690-5512848,5513144-5513249,
           5513387-5513554,5513644-5513834,5514410-5514634,
           5514818-5514935,5515023-5515195,5515280-5515327,
           5515484-5515589,5515697-5515802,5516211-5516332,
           5516661-5516741,5516844-5516934,5517036-5517132,
           5517287-5517919
          Length = 1002

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = +1

Query: 277 ANPPLQPREQL--AVHDAMASARQQLQATELSDAALARC----IESSDSPFPHTDPDLVL 438
           A P L P  Q+   +HD +++  Q +    L  AA  RC    IE+ +    + D  L  
Sbjct: 569 AAPALAPAVQIFSVLHDILSNEAQNILRNYLQTAAAKRCRRHMIETDEFMSSNNDSLLTD 628

Query: 439 LKATSAASMQCLLQCLGV 492
             A SAA ++    C+ +
Sbjct: 629 PMAISAAYLKMKTICINI 646


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,916
Number of Sequences: 37544
Number of extensions: 274730
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)