Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1467
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      95   6e-22
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          83   2e-18
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   7e-05
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 95.1 bits (226), Expect = 6e-22
 Identities = 41/81 (50%), Positives = 59/81 (72%)
 Frame = +3

Query: 228 VGCRRQVIAAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 407
           + C  + + AH++VLS CSPYF+E+ K  P +HP++ L+DV+ S L  L++F+Y GEVNV
Sbjct: 36  LACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNV 95

Query: 408 KQXELASFISTAEQLQVKGLT 470
            Q  L+SF+ TAE L+V GLT
Sbjct: 96  HQRSLSSFLKTAEVLRVSGLT 116



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +1

Query: 124 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQHIN*FYQYVLPIFKKC 303
           M   + F L WNN+ +++++ F  L    D VDVTLA +GR L+          P F++ 
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 304 SK 309
            K
Sbjct: 61  LK 62


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 83.4 bits (197), Expect = 2e-18
 Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
 Frame = +3

Query: 228 VGCRRQVIAAHKLVLSVCSPYFQEMFKMNPTQHPIVFL-KDVSHSALRDLLQFMYQGEVN 404
           + C    + AHK+VLS CS YFQ++   NP +HP + + +DV  + L+ +++F+Y+GE++
Sbjct: 40  LACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEID 99

Query: 405 VKQXELASFISTAEQLQVKGL 467
           V Q EL S + TA+QL++KGL
Sbjct: 100 VSQAELQSLLKTADQLKIKGL 120



 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 136 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAA-EGRLLQH 258
           + + L WNN+ +NM++ FH LL     VDVTLA  E  L  H
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAH 50


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 124 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 240
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 100 VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 231
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 463 PLT*SCSAVLINDANSSCLTLTSP 392
           P+T + S ++ N  NS+C    SP
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 101 FHVESSLSWRRTNNFHY 151
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,422
Number of Sequences: 438
Number of extensions: 3329
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)