Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1463
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.0  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.3  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 172  VTFWKIGLYERIMALARY 225
            +TFWK+ LY+  + L RY
Sbjct: 978  LTFWKLSLYDVFVPLERY 995


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 427 LTCVKHQFSATGVFPSCNGLGTRLT 353
           L+CV  +F  TGV P  + +G RLT
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLT 211


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 224 YLAKAII-RSYNPIFQNVTTFKHSYDHESLI 135
           YLA+ ++  +Y  IFQ +T  +   DH  L+
Sbjct: 663 YLAEGVVLNNYANIFQLITRMRQMADHPDLV 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,801
Number of Sequences: 5004
Number of extensions: 28778
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)