Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1463
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553...    28   5.3  
09_01_0013 - 355103-355435                                             28   5.3  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    27   9.3  

>12_02_0915 -
           24252495-24253079,24253560-24254759,24255234-24255303,
           24257127-24257188
          Length = 638

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 303 PXPQSARVSSNGAGGMAVSRVPSPLHDGNTPVAEN 407
           P P SA    +G GG+   ++ S L  G     EN
Sbjct: 578 PPPSSASAKGSGGGGLMPKKILSKLWSGKASSGEN 612


>09_01_0013 - 355103-355435
          Length = 110

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 308 SAVGARLFERRWRHGGEPRAQPVARRKHARRRKLVLHTSQSG 433
           +A G R +  RWR    PR +P  RR   +RR+   H+ + G
Sbjct: 32  AAGGRRAWRPRWRPQRRPRWRP-QRRLGQQRRRATWHSFRQG 72


>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
            17839719-17839998,17840275-17840396,17840451-17840556,
            17840814-17841020,17841130-17841255,17841719-17841817,
            17842265-17842456,17842555-17843073
          Length = 1171

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 512  VVILTLHPFLLYKKTKIVYCP 450
            +V+  L P+ LYK T+ ++CP
Sbjct: 1134 IVVTALIPYFLYKITQSLFCP 1154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,578
Number of Sequences: 37544
Number of extensions: 194449
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)