Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1463
         (528 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   2.7  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.4  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   8.4  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -3

Query: 412 HQFSATG---VFPSCNGLGTRLTAMPP 341
           H FSA     +  SCN LG  +  +PP
Sbjct: 363 HHFSAASQRFMLRSCNSLGDHIPPLPP 389


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 166  KVVTFWKIGLYERIMALARYNQ 231
            KV  +W++G YE  +    Y++
Sbjct: 1860 KVAKYWQVGNYEHRLTTYTYSE 1881


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 320  ARLFERRWRHGGEPRAQPVARRKHARRRKLVLHTSQ 427
            AR  +R  +  G P + P + R  ARR  L L  ++
Sbjct: 1055 ARARQRELQRAGRPPSPPPSPRTAARRADLRLRQAR 1090


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,819
Number of Sequences: 2352
Number of extensions: 7724
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)