Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1461
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.36 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   1.9  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   2.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   5.9  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   7.8  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   7.8  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 39  VQTTVKKIHAYSHHLFALRTL 101
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +3

Query: 18  RTVLWYVVQTTV-----KKIHAYSHHLFAL 92
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 68  IQPPLVCPKNTEHRARHAGKSACCPACVTLLGEG 169
           + PPL  PK+  HR   AG++      + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 353 LIIICTVVNIEILKLKNMNFL*TEQKRNEI 442
           L+ +C ++  +  +LKN N +  +Q  N I
Sbjct: 481 LLTVCNIIKAQFQRLKNANSIPAKQVENYI 510


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 319 PVRNIICVRNKIDNNMHCSKYRNFETKK 402
           P+R+IIC RN+++N       + F++ +
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHR 187


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 111 ARCSVFLGQTSGGCMHGFFSQ*SVPHTKAPY 19
           ARC  F+ Q SGG + GF  +  + + K  Y
Sbjct: 161 ARCFDFVLQKSGGNILGFLGKARILYAKGNY 191


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 53  EKNPCIQPPLVCPKNTEHRARHAGKS 130
           E  P +QPP  CP +  ++ + AG S
Sbjct: 114 EATPAVQPPATCPMSNSNQ-KPAGVS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,627
Number of Sequences: 5004
Number of extensions: 39430
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)